Natural variation of the holobiont for sustainable agroecosystems

Wolfram Weckwerth; Palak Chaturvedi; Arindam Ghatak; Melina Kerou; Vanika Garg; Abhishek Bohra; Guntur V Subbarao; Lisa Stein; Christa Schleper; Rajeev K Varshney; Sieglinde Snapp

doi:10.1016/j.tplants.2025.05.006

Natural variation of the holobiont for sustainable agroecosystems

Wolfram Weckwerth (Korresp. Autor*in), Palak Chaturvedi, Arindam Ghatak, Melina Kerou, Vanika Garg, Abhishek Bohra, Guntur V Subbarao, Lisa Stein, Christa Schleper, Rajeev K Varshney, Sieglinde Snapp

Veröffentlichungen: Beitrag in Fachzeitschrift › Review › Peer Reviewed

Abstract

Plant evolution is largely driven by plant-microbe interactions, yet the ecology of the plant holobiont is not well understood at a molecular level. However, these relationships hold diverse benefits for sustainable agriculture as nature-based solutions (NbS). We propose a workflow to enhance understanding of natural variation in the plant-soil microbiome holobiont, addressing key challenges like growth promotion, stress resilience, nitrogen use efficiency (NUE), biological nitrification inhibition (BNI), healthy soils, and improving fertilization practices towards a more natural agroecosystem. We discuss a panome-wide association study (PWAS) approach to discover and incorporate novel genetic diversity from exotic germplasm into breeding populations. Ultimately, understanding natural variation of the holobiont in agroecosystems will contribute to the development of novel climate-resilient crop varieties for food security.

Originalsprache	Englisch
Fachzeitschrift	Trends in Plant Science
DOIs	https://doi.org/10.1016/j.tplants.2025.05.006
Publikationsstatus	Elektronische Veröffentlichung vor Drucklegung - 27 Juni 2025

ÖFOS 2012

106022 Mikrobiologie

UN SDGs

Dieser Output leistet einen Beitrag zu folgendem(n) Ziel(en) für nachhaltige Entwicklung

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10.1016/j.tplants.2025.05.006Lizenz: CC BY 4.0

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The Holobiont Revolution: How wheat is becoming more climate-resilient through nature-based plant breeding and machine learning
Weckwerth, W. & Bittermann, T.
22/07/25
1 eigener Medienbeitrag
Presse/Medien: Medienbericht

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abstract = "Plant evolution is largely driven by plant-microbe interactions, yet the ecology of the plant holobiont is not well understood at a molecular level. However, these relationships hold diverse benefits for sustainable agriculture as nature-based solutions (NbS). We propose a workflow to enhance understanding of natural variation in the plant-soil microbiome holobiont, addressing key challenges like growth promotion, stress resilience, nitrogen use efficiency (NUE), biological nitrification inhibition (BNI), healthy soils, and improving fertilization practices towards a more natural agroecosystem. We discuss a panome-wide association study (PWAS) approach to discover and incorporate novel genetic diversity from exotic germplasm into breeding populations. Ultimately, understanding natural variation of the holobiont in agroecosystems will contribute to the development of novel climate-resilient crop varieties for food security.",

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AU - Weckwerth, Wolfram

AU - Chaturvedi, Palak

AU - Ghatak, Arindam

AU - Kerou, Melina

AU - Garg, Vanika

AU - Bohra, Abhishek

AU - Subbarao, Guntur V

AU - Stein, Lisa

AU - Schleper, Christa

AU - Varshney, Rajeev K

AU - Snapp, Sieglinde

PY - 2025/6/27

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N2 - Plant evolution is largely driven by plant-microbe interactions, yet the ecology of the plant holobiont is not well understood at a molecular level. However, these relationships hold diverse benefits for sustainable agriculture as nature-based solutions (NbS). We propose a workflow to enhance understanding of natural variation in the plant-soil microbiome holobiont, addressing key challenges like growth promotion, stress resilience, nitrogen use efficiency (NUE), biological nitrification inhibition (BNI), healthy soils, and improving fertilization practices towards a more natural agroecosystem. We discuss a panome-wide association study (PWAS) approach to discover and incorporate novel genetic diversity from exotic germplasm into breeding populations. Ultimately, understanding natural variation of the holobiont in agroecosystems will contribute to the development of novel climate-resilient crop varieties for food security.

AB - Plant evolution is largely driven by plant-microbe interactions, yet the ecology of the plant holobiont is not well understood at a molecular level. However, these relationships hold diverse benefits for sustainable agriculture as nature-based solutions (NbS). We propose a workflow to enhance understanding of natural variation in the plant-soil microbiome holobiont, addressing key challenges like growth promotion, stress resilience, nitrogen use efficiency (NUE), biological nitrification inhibition (BNI), healthy soils, and improving fertilization practices towards a more natural agroecosystem. We discuss a panome-wide association study (PWAS) approach to discover and incorporate novel genetic diversity from exotic germplasm into breeding populations. Ultimately, understanding natural variation of the holobiont in agroecosystems will contribute to the development of novel climate-resilient crop varieties for food security.

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KW - biological nitrification inhibition (BNI)

KW - holobiont

KW - food security

KW - rhizosphere microbiome

KW - root exudates

KW - genome-wide association studies (GWAS)

KW - sustainable agriculture

KW - plant–microbiome association

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DO - 10.1016/j.tplants.2025.05.006

M3 - Review

C2 - 40579258

SN - 1360-1385

JO - Trends in Plant Science

JF - Trends in Plant Science

ER -

Natural variation of the holobiont for sustainable agroecosystems

Abstract

ÖFOS 2012

UN SDGs

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Andere Dateien und Links

Fingerprint

Presseberichte

The Holobiont Revolution: How wheat is becoming more climate-resilient through nature-based plant breeding and machine learning

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