WikiPathways 2024: next generation pathway database

Ayushi Agrawal; Hasan Balcı; Kristina Hanspers; Susan L Coort; Marvin Martens; Denise N Slenter; Friederike Ehrhart; Daniela Digles; Andra Waagmeester; Isabel Wassink; Tooba Abbassi-Daloii; Elisson N Lopes; Aishwarya Iyer; Javier Millán Acosta; Lars G Willighagen; Kozo Nishida; Anders Riutta; Helena Basaric; Chris T Evelo; Egon L Willighagen; Martina Kutmon; Alexander R Pico

doi:10.1093/nar/gkad960

WikiPathways 2024: next generation pathway database

Ayushi Agrawal, Hasan Balcı, Kristina Hanspers, Susan L Coort, Marvin Martens, Denise N Slenter, Friederike Ehrhart, Daniela Digles, Andra Waagmeester, Isabel Wassink, Tooba Abbassi-Daloii, Elisson N Lopes, Aishwarya Iyer, Javier Millán Acosta, Lars G Willighagen, Kozo Nishida, Anders Riutta, Helena Basaric, Chris T Evelo, Egon L WillighagenMartina Kutmon, Alexander R Pico

Department für Pharmazeutische Wissenschaften

Veröffentlichungen: Beitrag in Fachzeitschrift › Artikel › Peer Reviewed

Abstract

WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.

Originalsprache	Englisch
Seiten (von - bis)	D679-D689
Fachzeitschrift	Nucleic Acids Research
Jahrgang	52
Ausgabenummer	D1
DOIs	https://doi.org/10.1093/nar/gkad960
Publikationsstatus	Veröffentlicht - 5 Jan. 2024

ÖFOS 2012

106005 Bioinformatik

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10.1093/nar/gkad960Lizenz: CC BY 4.0

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Zitationsweisen

Agrawal, A., Balcı, H., Hanspers, K., Coort, S. L., Martens, M., Slenter, D. N., Ehrhart, F., Digles, D., Waagmeester, A., Wassink, I., Abbassi-Daloii, T., Lopes, E. N., Iyer, A., Acosta, J. M., Willighagen, L. G., Nishida, K., Riutta, A., Basaric, H., Evelo, C. T., ... Pico, A. R. (2024). WikiPathways 2024: next generation pathway database. Nucleic Acids Research, 52(D1), D679-D689. https://doi.org/10.1093/nar/gkad960

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abstract = "WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.",

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note = "{\textcopyright} The Author(s) 2023. Published by Oxford University Press on behalf of Nucleic Acids Research.",

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doi = "10.1093/nar/gkad960",

language = "English",

volume = "52",

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Agrawal, A, Balcı, H, Hanspers, K, Coort, SL, Martens, M, Slenter, DN, Ehrhart, F, Digles, D, Waagmeester, A, Wassink, I, Abbassi-Daloii, T, Lopes, EN, Iyer, A, Acosta, JM, Willighagen, LG, Nishida, K, Riutta, A, Basaric, H, Evelo, CT, Willighagen, EL, Kutmon, M & Pico, AR 2024, 'WikiPathways 2024: next generation pathway database', Nucleic Acids Research, Jg. 52, Nr. D1, S. D679-D689. https://doi.org/10.1093/nar/gkad960

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T1 - WikiPathways 2024: next generation pathway database

AU - Agrawal, Ayushi

AU - Balcı, Hasan

AU - Hanspers, Kristina

AU - Coort, Susan L

AU - Martens, Marvin

AU - Slenter, Denise N

AU - Ehrhart, Friederike

AU - Digles, Daniela

AU - Waagmeester, Andra

AU - Wassink, Isabel

AU - Abbassi-Daloii, Tooba

AU - Lopes, Elisson N

AU - Iyer, Aishwarya

AU - Acosta, Javier Millán

AU - Willighagen, Lars G

AU - Nishida, Kozo

AU - Riutta, Anders

AU - Basaric, Helena

AU - Evelo, Chris T

AU - Willighagen, Egon L

AU - Kutmon, Martina

AU - Pico, Alexander R

PY - 2024/1/5

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AB - WikiPathways (wikipathways.org) is an open-source biological pathway database. Collaboration and open science are pivotal to the success of WikiPathways. Here we highlight the continuing efforts supporting WikiPathways, content growth and collaboration among pathway researchers. As an evolving database, there is a growing need for WikiPathways to address and overcome technical challenges. In this direction, WikiPathways has undergone major restructuring, enabling a renewed approach for sharing and curating pathway knowledge, thus providing stability for the future of community pathway curation. The website has been redesigned to improve and enhance user experience. This next generation of WikiPathways continues to support existing features while improving maintainability of the database and facilitating community input by providing new functionality and leveraging automation.

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DO - 10.1093/nar/gkad960

M3 - Article

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SN - 0305-1048

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SP - D679-D689

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - D1

ER -

WikiPathways 2024: next generation pathway database

Abstract

ÖFOS 2012

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