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2025
A Comprehensive and Ultrasensitive Isotope Calibration Method for Soil Amino Compounds Using Orbitrap Mass Spectrometry
Li, T., Li, Y., Salas, E., Tian, Y., Liu, X. & Wanek, W., 12 Jun 2025, (E-pub ahead of print) In: Analytical Chemistry.Publications: Contribution to journal › Article › Peer Reviewed
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Advantages of run-reverse motility pattern of bacteria for tracking light and small food sources in dynamic fluid environments
Guseva, K. & Feudel, U., Jun 2025, In: Journal of the Royal Society. Interface. 22, 227, p. 20250037Publications: Contribution to journal › Article › Peer Reviewed
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A landscape-scale view of soil organic matter dynamics
Doetterl, S., Berhe, A. A., Heckman, K., Lawrence, C., Schnecker, J., Vargas, R., Vogel, C. & Wagai, R., Jan 2025, In: Nature Reviews. Earth & Environment. 6, p. 67-81 15 p.Publications: Contribution to journal › Article › Peer Reviewed
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A Pilot Study on the Impact of Cranberry and Ascorbic Acid Supplementation on the Urinary Microbiome of Healthy Women: A Randomized Controlled Trial
Nussbaumer-Pröll, A., Hausmann, B., Weber, M., Pjevac, P., Berry, D. & Zeitlinger, M., 7 Mar 2025, In: Antibiotics. 14, 3, 278.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Arbuscular Mycorrhizal Fungi Boost Development of an Invasive Brassicaceae
Trombley, J., Celenza, J. L., Frey, S. D. & Anthony, M., 25 Mar 2025, (E-pub ahead of print) In: Plant, Cell and Environment. 48, 7, p. 4928-4937 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
A sedimentary ancient DNA perspective on human and carnivore persistence through the Late Pleistocene in El Mirón Cave, Spain
Gelabert, P., Oberreiter, V., Straus, L. G., Morales, M. R. G., Sawyer, S., Marín-Arroyo, A. B., Geiling, J. M., Exler, F., Brueck, F., Franz, S., Cano, F. T., Szedlacsek, S., Zelger, E., Hämmerle, M., Zagorc, B., Llanos-Lizcano, A., Cheronet, O., Tejero, J-M., Rattei, T., Kraemer, S. M., & 1 others, 2 Jan 2025, In: Nature Communications. 16, 1, 13 p., 107.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
A transdisciplinary, comparative analysis reveals key risks from Arctic permafrost thaw
Gartler, S., Scheer, J., Meyer, A., Abass, K., Bartsch, A., Doloisio, N., Falardeau, J., Hugelius, G., Irrgang, A., Ingimundarson, J. H., Jungsberg, L., Lantuit, H., Larsen, J. N., Lodi, R., Martin, V. S., Mercer, L., Nielsen, D., Overduin, P., Povoroznyuk, O., Rautio, A., & 8 others, 16 Jan 2025, In: Communications Earth & Environment. 6, 20 p., 21.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Biochar application using recycled annual self straw reduces long-term greenhouse gas emissions from paddy fields with economic benefits
Nan, Q., Speth, D., Qin, Y., Chi, W., Milucka, J., Gu, B. & Wu, W., May 2025, In: Nature Food. 6, 5, p. 456-465 10 p.Publications: Contribution to journal › Article › Peer Reviewed
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Biosorption of heavy metals by microalgae: Hazardous side effects for marine organisms
Lintner, M., Balzano, S., Keul, N., Heinz, P., Manecki, M., Klimek, A., Wanek, W., Cyran, N., Gruber, D., Schmidt, K., Holzmann, M., Goleń, J. & Tyszka, J., Mar 2025, In: Chemosphere. 372, 8 p., 144080.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Capacity to form common mycorrhizal networks reduces the positive impact of clonal integration between plants
Zhang, Y., Anthony, M. A., Yuan, Q., Wang, Y., Zhao, P., Chen, E. & Peng, S., Mar 2025, In: Physiologia Plantarum. 177, 2, 14 p., e70149.Publications: Contribution to journal › Article › Peer Reviewed
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Chitinivorax: The New Kid on the Block of Bacterial 2-Alkyl-4(1H)-quinolone Producers
Savchenko, V., Yu, X. A., Polz, M. F. & Böttcher, T., 18 Apr 2025, In: ACS Chemical Biology. 20, 4, p. 960-966 7 p.Publications: Contribution to journal › Article › Peer Reviewed
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Contrasting wood carbon quality of angiosperms and gymnosperms drives fungal-mediated decomposition responses to nutrient enrichment
Xu, Z., Hu, Z., Jiang, L., Qiu, T., Li, W. & Anthony, M. A., 1 Oct 2025, In: Forest Ecology and Management. 593, 122910.Publications: Contribution to journal › Article › Peer Reviewed
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Dietary oxidized lipids in redox biology: Oxidized olive oil disrupts lipid metabolism and induces intestinal and hepatic inflammation in C57BL/6J mice
Bao, Y., Osowiecka, M., Ott, C., Tziraki, V., Meusburger, L., Blaßnig, C., Krivda, D., Pjevac, P., Séneca Cardoso Da Silva, J., Strauß, M., Steffen, C., Heck, V., Aygün, S., Duszka, K., Doppelmayer, K., Grune, T. & Pignitter, M., Apr 2025, In: Redox biology. 81, 17 p., 103575.Publications: Contribution to journal › Article › Peer Reviewed
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Discovery of the antifungal compound ilicicolin K through genetic activation of the ilicicolin biosynthetic pathway in Trichoderma reesei
Burger, I., Schmal, M., Peikert, K., Fourtis, L., Suster, C., Stanetty, C., Schnalzer, D., Hufnagel, B., Böttcher, T., Birner-Gruenberger, R., Mach, R. L., Mach-Aigner, A. R., Schittmayer, M. & Zimmermann, C., 11 Mar 2025, In: Biotechnology for biofuels and bioproducts. 18, 1, p. 32Publications: Contribution to journal › Article › Peer Reviewed
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Drought Impacts on Plant-Soil Carbon Allocation-Integrating Future Mean Climatic Conditions
Leyrer, V., Blum, J., Marhan, S., Kandeler, E., Zimmermann, T., Berauer, B. J., Schweiger, A. H., Canarini, A., Richter, A. & Poll, C., Feb 2025, In: Global Change Biology. 31, 2, 14 p., e70070.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Effects of live and peptide-based antimicrobiota vaccines on Ixodes ricinus fitness, microbiota, and acquisition of tick-borne pathogens
Maitre, A., Mateos-Hernandez, L., Kratou, M., Egri, N., Maye, J., Juan, M., Hodzic, A., Obregon, D., Abuin-Denis, L., Piloto-Sardinas, E., Fogaca, A. C. & Cabezas-Cruz, A., 20 Feb 2025, In: Pathogens. 14, 3, 25 p., 206.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
From Eggs to Guts: Symbiotic Association of Sodalis nezarae sp. nov. with the Southern Green Shield Bug Nezara viridula
Rogowska-van der Molen, M. A., Manzano-Marín, A., Postma, J. L., Coolen, S., van Alen, T., Jansen, R. S. & Welte, C. U., 4 Mar 2025, In: FEMS microbiology ecology. 101, 3, 13 p., fiaf017.Publications: Contribution to journal › Article › Peer Reviewed
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Gastrointestinal Barrier Disruption in Post-COVID Syndrome Fatigue Patients
Rohrhofer, J., Wolflehner, V., Schweighardt, J., Koidl, L., Stingl, M., Zehetmayer, S., Séneca, J., Pjevac, P. & Untersmayr, E., 15 May 2025, (E-pub ahead of print) In: Allergy: European journal of allergy and immunology. 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Global diversity and distribution of antibiotic resistance genes in human wastewater treatment systems
Global Water Microbiome Consortium, Zhu, C., Wu, L., Ning, D., Tian, R., Gao, S., Zhang, B., Zhao, J., Zhang, Y., Xiao, N., Wang, Y., Brown, M. R., Tu, Q., Ju, F., Wells, G. F., Guo, J., He, Z., Nielsen, P. H., Wang, A., Zhang, Y., & 13 others, Dec 2025, In: Nature Communications. 16, 1, 4006.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Human-derived microRNA 21 regulates indole and L-tryptophan biosynthesis transcripts in the gut commensal Bacteroides thetaiotaomicron
Flanagan, K., Gassner, K., Lang, M., Ozelyte, J., Hausmann, B., Crepaz, D., Pjevac, P., Gasche, C., Berry, D., Vesely, C. & Pereira, F. C., 29 Jan 2025, (E-pub ahead of print) In: mBio. p. e0392824Publications: Contribution to journal › Article › Peer Reviewed
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Identification and functional analysis of growth rate associated long non-coding RNAs in Komagataella phaffii
Coltman, B. L., Motheramgari, K., Tatto, N. & Gasser, B., 22 Apr 2025, In: Computational and Structural Biotechnology Journal. 27, p. 1693-1705 13 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Intra-individual variability in ancient plasmodium DNA recovery highlights need for enhanced sampling
Llanos-Lizcano, A., Hämmerle, M., Sperduti, A., Sawyer, S., Zagorc, B., Özdoğan, K. T., Guellil, M., Cheronet, O., Kuhlwilm, M., Pinhasi, R. & Gelabert, P., 4 Jan 2025, In: Scientific Reports. 15, 1, 757.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Metabolome trajectories in male and female athletes
Schoeny, H., Stelzer, B., Hofbauer, T., Reisenbauer, F., Abiead, Y. E., Scharhag, J. & Koellensperger, G., 11 Jun 2025, (E-pub ahead of print) In: Journal of Sport and Health Science. p. 101065Publications: Contribution to journal › Article › Peer Reviewed
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Microhabitat accessibility determines peptide substrate degradation by soil microbial community
Arellano-Caicedo, C., Ohlsson, P., Moradi, S. & Hammer, E. C., 7 Jan 2025, In: Microbiology Spectrum. 13, 1, 17 p., e01898-23.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Morphological and molecular identification of obligatory myiasis-causing species in wild cervids in Croatia
Gagović, E., Jurkowic Zilic, D., Pintur, K., Hodzic, A., Naletilic, S. & Beck, R., 14 Jan 2025, In: Animals. 15, 2, 10 p., 208.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrogen availability in soil controls uptake of different nitrogen forms by plants
Liu, M., Xu, X., Wanek, W., Sun, J., Bardgett, R. D., Tian, Y., Cui, X., Jiang, L., Ma, Z., Kuzyakov, Y., Ouyang, H. & Wang, Y., Feb 2025, In: New Phytologist. 245, 4, p. 1450-1467 18 p.Publications: Contribution to journal › Article › Peer Reviewed
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Nitrogen input decreases microbial nitrogen use efficiency in surface soils of a temperate forest in northeast China
Sun, L., Qiao, Y., Wanek, W., Moorhead, D. L., Cui, Y., Peng, Y., Song, L., Hu, B., Zhang, T. & Li, S., Jan 2025, In: Geoderma. 453, 10 p., 117159.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Non-zoonotic tick-borne pathogens in Western Balkan
Kapo, N., Zuber Bogdanović, I., Gagović, E., Jurković Žilić, D., Sukara, R., Adžić, B., Kadriaj, P., Naletilić, Š., Vodica, A., Cvetkovikj, A., Djadjovski, I., Potkonjak, A., Savić, S., Tomanović, S., Omeragić, J., Hodžić, A. & Beck, R., 14 Mar 2025, In: Parasites & Vectors. 18, 1, 24 p., 107.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Novel high-quality amoeba genomes reveal widespread codon usage mismatch between giant viruses and their hosts
Willemsen, A., Manzano-Marín, A. & Horn, M., 6 Jan 2025, In: Genome Biology and Evolution. 17, 1, 18 p., evae271.Publications: Contribution to journal › Article › Peer Reviewed
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Pathway Realizability in Chemical Networks
Andersen, J. L., Banke, S., Fagerberg, R., Flamm, C., Merkle, D. & Stadler, P. F., Feb 2025, In: Journal of computational biology : a journal of computational molecular cell biology. 32, 2, p. 164-187 24 p.Publications: Contribution to journal › Article › Peer Reviewed
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Peritrophic matrix: an important determinant of vector competence in hematophagous arthropods
Hodžić, A., Duscher, G. G., Alić, A., Beck, R. & Berry, D., 26 Mar 2025, (E-pub ahead of print) In: Trends in parasitology. 13 p., TREPAR 2670.Publications: Contribution to journal › Article › Peer Reviewed
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Post-drought organic carbon mineralization leads to high productivity and nutrient uptake efficiency of perennial grassland after rewetting
Schärer, M. L., Fuchslueger, L., Canarini, A., Richter, A., Lüscher, A. & Kahmen, A., May 2025, In: Soil Biology and Biochemistry. 204, 109744.Publications: Contribution to journal › Article › Peer Reviewed
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Preferential use of organic acids over sugars by soil microbes in simulated root exudation
Wiesenbauer, J., Gorka, S., Jenab, K., Schuster, R., Kumar, N., Rottensteiner, C., König, A., Krämer, S., Inselsbacher, E. & Kaiser, C., 16 Feb 2025, In: Soil Biology and Biochemistry. 203Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Protocol for the visualization of bacteria in the tick gut using whole-mount fluorescence in situ hybridization
Hodzic, A., Kunert, M. & Berry, D., 20 Jun 2025, In: STAR Protocols. 6, 2, p. 103814 15 p.Publications: Contribution to journal › Article › Peer Reviewed
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Pulsatile basal gene expression as a fitness determinant in bacteria
Jain, K., Hauschild, R., Bochkareva, O. O., Roemhild, R., Tkačik, G. & Guet, C. C., 7 Apr 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 15, e2413709122.Publications: Contribution to journal › Article › Peer Reviewed
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Quantifying Soil Microbiome Abundance by Metatranscriptomics and Complementary Molecular Techniques-Cross-Validation and Perspectives
Dahl, M. B., Brachmann, S., Söllinger, A., Schnell, M., Ahlers, L., Wutkowska, M., Hoff, K. J., Nath, N., Groß, V., Wang, H., Weil, M., Piecha, M., Schaffer, M., Jensen, C., Kuss, A. W., Gall, C., Wimmer, E., Pribasnig, T., Tveit, A. T., Sigurdsson, B. D., & 3 others, 3 Jun 2025, (E-pub ahead of print) In: Molecular Ecology Resources. p. e14130Publications: Contribution to journal › Article › Peer Reviewed
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Quantitative analysis of amino acid excretion by Methanothermobacter marburgensis under N2-fixing conditions
Reischl, B., Schupp, B., Palabikyan, H., Steger-Mähnert, B., Fink, C. & Rittmann, S. K-M. R., 30 Jan 2025, In: Scientific Reports. 15, 1, p. 3755Publications: Contribution to journal › Article › Peer Reviewed
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Rainfall seasonality shapes belowground root trait dynamics in an Amazonian tropical rainforest: A test of the stress-dominance hypothesis
Valverde-Barrantes, O. J., Figueiredo Lugli, L., Fuchslueger, L., Hofhansl, F., Martins, N. P., Cordeiro, A. L., Schapp, K., Anderson, K., Garcia, S., Grandis, A., Miron, C. A., Fleisher, K., Hoosbeek, M. R., Hartley, I. P., Mendoza, E., Lapola, D. & Quesada, C. A., 1 Mar 2025, In: Functional Ecology. 39, 3, p. 799-812 14 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Risk-reward trade-off during carbon starvation generates dichotomy in motility endurance among marine bacteria
Keegstra, J. M., Landry, Z. C., Zweifel, S. T., Roller, B. R. K., Baumgartner, D. A., Carrara, F., Martínez-Pérez, C., Clerc, E. E., Ackermann, M. & Stocker, R., 26 May 2025, In: Nature Microbiology. 25 p.Publications: Contribution to journal › Article › Peer Reviewed
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Secondary Metabolite Biosynthesis Potential of Streptomyces Spp. from the Rhizosphere of Leontopodium nivale Subsp. alpinum
Vignolle, A., Zehl, M., Kirkegaard, R. H., Vignolle, G. A. & Zotchev, S. B., 25 Feb 2025, In: ACS Omega. 10, 7, p. 7163-7171 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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Selective heterotopic bacteria can selfishly process polysaccharides in freshwater lakes
Čačković, A., Pjevac, P., Orlić, S. & Reintjes, G., 22 Apr 2025, In: Cell Reports. 44, 4, 19 p., 115415.Publications: Contribution to journal › Article › Peer Reviewed
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Shewanella is a putative producer of polyunsaturated fatty acids in the gut soil of the composting earthworm Eisenia fetida
Wittlinger, J-P., Castejon Caballero, N., Hausmann, B., Berry, D. & Schnorr, S. L., 16 Jan 2025, In: Applied and Environmental Microbiology. p. e0206924Publications: Contribution to journal › Article › Peer Reviewed
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Single-cell imaging reveals efficient nutrient uptake and growth of microalgae darkening the Greenland Ice Sheet
Halbach, L., Kitzinger, K., Hansen, M., Littmann, S., Benning, L. G., Bradley, J. A., Whitehouse, M. J., Olofsson, M., Mourot, R., Tranter, M., Kuypers, M. M. M., Ellegaard-Jensen, L. & Anesio, A. M., 19 Feb 2025, In: Nature Communications. 16, 14 p., 1521.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Synergistic negative effects of ash dieback and Armillaria root rot on health and stability of mature ash trees
Spiegel, P., Hintze, T., Kopp, A., Sahli, M., Detter, A., Queloz, V., Prospero, S. & Heinzelmann, R., 8 Feb 2025, In: Forest Ecology and Management. 580, 15 p., 122476.Publications: Contribution to journal › Article › Peer Reviewed
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Testing the Purity of Limnospira fusiformis Cultures After Axenicity Treatments
Schagerl, M., Kaptejna, A., Polz, F., Ali, S. S., Huo, S., Seneca, J., Pjevac, P. & Hechtl, V., 17 Jan 2025, In: Cells.Publications: Contribution to journal › Article › Peer Reviewed
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The contribution of pelagic fungi to ocean biomass
Breyer, E., Stix, C., Kilker, S., Roller, B. R. K., Panagou, F., Doebke, C., Amano, C., Saavedra, D. E. M., Coll-García, G., Steger-Mähnert, B., Dachs, J., Berrojalbiz, N., Vila-Costa, M., Sobrino, C., Fuentes-Lema, A., Berthiller, F., Polz, M. F. & Baltar, F., May 2025, In: Cell.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
TropiRoot 1.0: Database of tropical root characteristics across environments
Cordeiro, A. L., Cusack, D. F., Guerrero-Ramírez, N., Norby, R. J., Toro, L., Wong, M. Y., Wright, S. J., Cabugao, K. G. M., Andersen, K. M., Fuchslueger, L., Iversen, C. M., Soper, F., Ghimire, O. P., Lugli, L. F., Miron, A. C., Valverde-Barrantes, O., Arnaud, M., Batterman, S. A., Dietterich, L. H., Lee, M. Y., & 18 others, May 2025, In: Ecology. 106, 5, p. e70074 e70074.Publications: Contribution to journal › Article › Peer Reviewed
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Utilization of soil microbial community to enhance mechanical properties of geopolymer paste for sustainable construction materials
Danilyan, E., Ekaputri, J. J., Zulaika, E., Risdanareni, P. & Snoeck, D., 2 May 2025, In: Case Studies in Construction Materials. 22 p.Publications: Contribution to journal › Article › Peer Reviewed
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2024
Abiotic plant stress mitigation by Trichoderma species
Contreras-Cornejo, H. A., Schmoll, M., Esquivel-Ayala, B. A., González-Esquivel, C. E., Rocha-Ramírez, V. & Larsen, J., 11 Apr 2024, In: Soil Ecology Letters. 6, 4, 12 p., 240240.Publications: Contribution to journal › Article › Peer Reviewed
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Adaptations to nitrogen availability drive ecological divergence of chemosynthetic symbionts
Morel-Letelier, I., Yuen, B., Kück, A. C., Camacho-García, Y. E., Petersen, J. M., Lara, M., Leray, M., Eisen, J. A., Osvatic, J. T., Gros, O. & Wilkins, L. G. E., 31 May 2024, In: PLoS Genetics. 20, 5, e1011295.Publications: Contribution to journal › Article › Peer Reviewed
Open Access