Research Group Bioinformatics and Computational Biology

Activities

Activities per year 2011 2016 2017 2019 2022 2024

• 84 Talk or oral contribution
• 54 Poster presentation
• 8 Participation in ...
• 2 Organisation of ...
• 1 More
  • 1 Publication peer-review

Activities per year

Search results

• Exoribonuclease-resistant RNAs in tick-borne flaviviruses

  Leonhard Paul Sidl (Contributor), Denis Skibinski (Contributor), Hua-Ting Yao (Contributor) & Michael Thomas Wolfinger (Contributor)

  11 Feb 2024

  Activity: Talks and presentations › Poster presentation › Science to Science

• Structural Consequences of RNA Modifications

  Hamid Reza Mansouri Khosravi (Contributor), Thomas Spicher (Contributor), Ronny Lorenz (Contributor), Ivo Hofacker (Contributor) & Michael F. Jantsch (Contributor)

  1 Feb 2024

  Activity: Talks and presentations › Poster presentation › Science to Science

• Free energy calculation of modified nucleotides by molecular dynamics simulations

  Thomas Spicher (Contributor), Ronny Lorenz (Contributor) & Ivo Hofacker (Contributor)

  1 Feb 2024

  Activity: Talks and presentations › Poster presentation › Science to Science

• Predicting early mortality of septic patients from a multi centric study within the first day after ICU admission

  Jan Müller (Speaker) & Arndt von Haeseler (Speaker)

  11 Sep 2023 → 13 Sep 2023

  Activity: Talks and presentations › Poster presentation › Science to Science

• From scRNA-seq count matrices to phylogenetic inference: Rethinking the problem of lineage reconstruction

  Julia Naas (Speaker), Christiane Elgert (Speaker) & Arndt von Haeseler (Speaker)

  1 Sep 2023

  Activity: Talks and presentations › Poster presentation › Science to Science

• How much phylogenetic information is in a branch? Satute gives an answer

  Cassius Manuel (Speaker) & Arndt von Haeseler (Speaker)

  23 Jul 2023 → 25 Jul 2023

  Activity: Talks and presentations › Poster presentation › Science to Science

• Structural Consequences of RNA Modifications

  Hamid Reza Mansouri Khosravi (Contributor), Ronny Lorenz (Contributor), Kasra Honarmand Tamizkar (Contributor), Ivo Hofacker (Contributor) & Michael F. Jantsch (Contributor)

  27 Apr 2023

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modified nucleotides in RNA structure prediction

  Thomas Spicher (Contributor), Yuliia Varenyk (Contributor), Ronny Lorenz (Contributor) & Ivo Hofacker (Contributor)

  27 Apr 2023

  Activity: Talks and presentations › Poster presentation › Science to Science

• Computational Estimation of Energy Parameters for RNA folding

  Thomas Spicher (Contributor), Ronny Lorenz (Contributor) & Ivo Hofacker (Contributor)

  26 Oct 2022

  Activity: Talks and presentations › Poster presentation › Science to Science

• Analysis of modified nucleotides' constraints in the secondary structure prediction of tRNA

  Yuliia Varenyk (Contributor), Ivo Hofacker (Contributor), Ronny Lorenz (Contributor) & Thomas Spicher (Contributor)

  26 Oct 2022

  Activity: Talks and presentations › Poster presentation › Science to Science

• Challenges in the computational sequencing analysis of large tRNA genomes: tRNA abundance and modification dynamics

  Maria Waldl (Contributor), Tom Rappol (Contributor), Elisa Vilardo (Contributor) & Ivo Hofacker (Contributor)

  26 Oct 2022

  Activity: Talks and presentations › Poster presentation › Science to Science

• Phylogeny and artificial neural networks

  Alina Leuchtenberger (Speaker), Stephen Crotty (Contributor), Tamara Drucks (Contributor), Heiko Andreas Schmidt (Contributor), Sebastian Burgstaller-Muehlbacher (Contributor) & Arndt von Haeseler (Contributor)

  9 Oct 2022

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modeling the Kinetics of RNA-RNA Interaction Formation

  Maria Waldl (Contributor), Irene Katharina Beckmann-Schneider (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  31 May 2022

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modelling the formation of RNA-RNA interactions in 3D

  Irene Katharina Beckmann-Schneider (Contributor), Maria Waldl (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  16 Dec 2021

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modelling the kinetics of RNA-RNA Interaction formation

  Maria Waldl (Contributor), Irene Katharina Beckmann-Schneider (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  28 Sep 2021

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modelling RNA-RNA Interactions in 3D

  Irene Katharina Beckmann-Schneider (Contributor), Maria Waldl (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  28 Sep 2021

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modified nucleotides in RNA sequences of tRNAdb database.

  Yuliia Varenyk (Contributor), Ronny Lorenz (Contributor) & Ivo Hofacker (Contributor)

  17 Sep 2021

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modeling the formation of RNA-RNA interactions

  Maria Waldl (Contributor), Irene Katharina Beckmann (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  27 Nov 2020

  Activity: Talks and presentations › Poster presentation › Science to Science

• Conformation conditions of RNA-RNA interaction in 3D structure prediction

  Irene Katharina Beckmann (Contributor), Maria Waldl (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  27 Nov 2020

  Activity: Talks and presentations › Poster presentation › Science to Science

• Discoveries of dual-host affiliated Insect-specific flaviviruses in Zambia

  Christida E. Wastika (Contributor), Yasuko Orba (Contributor), Michito Sasaki (Contributor), Yuki Eshita (Contributor), Bernard M. Hang’ombe (Contributor), Michael Thomas Wolfinger (Contributor), William W. Hall (Contributor) & Hirofumi Sawa (Contributor)

  24 Feb 2020

  Activity: Talks and presentations › Poster presentation › Science to Science

• Coarse-Grained RNA 3D Structure Prediction with auxiliary Experimental Data

  Irene Katharina Beckmann (Contributor), Bernhard Thiel (Contributor) & Ivo Hofacker (Contributor)

  15 May 2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• Fast Analysis of RNA-RNA Interaction Kinetics for Refining RNA Targeting Screens

  Maria Waldl (Contributor), Irene Katharina Beckmann (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  30 Jan 2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• Prediction of RNA-RNA Interaction in 3D

  Irene Katharina Beckmann (Contributor), Maria Waldl (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  30 Jan 2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• MSF: Modulated Sub-graph Finder to Identify Gene Perturbations to Signal Transductions from External Stimuli

  Mariam Rukhama Farman (Contributor), Fabian Amman (Contributor) & Ivo Hofacker (Contributor)

  30 Jan 2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• Regulation of Gene Expression in the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis in Response to Cyanate as Substrate

  Johanna Wiesinger (Contributor), Thomas Yssing Michaelsen (Contributor), Marton Palatinszky (Contributor), Michael Thomas Wolfinger (Contributor), Petra Pjevac (Contributor), Sřren Michael Karst (Contributor), Mads Albertsen (Contributor) & Michael Wagner (Contributor)

  2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• Regulation of Gene Expression in the Ammonia-Oxidizing Archaeon Nitrososphaera gargensis in Response to Cyanate as Substrate

  Johanna Wiesinger (Contributor), Thomas Yssing Michaelsen (Contributor), Marton Palatinszky (Contributor), Michael Thomas Wolfinger (Contributor), Petra Pjevac (Contributor), Sřren Michael Karst (Contributor), Mads Albertsen (Contributor) & Michael Wagner (Contributor)

  2019

  Activity: Talks and presentations › Poster presentation › Science to Science

• The Viral world as a Network of conserved RNA structures and Proteins

  Roman Wilhelm Ochsenreiter (Contributor) & Ivo Hofacker (Contributor)

  11 Jun 2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• Identification and Classification of Pseudoknots and their Impact on RNA 3D structure prediction

  Irene Katharina Beckmann-Schneider (Contributor), Bernhard Thiel (Contributor) & Ivo Hofacker (Contributor)

  5 Apr 2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• Gene Perturbation to Signal Transduction by External Stimuli

  Mariam Rukhama Farman (Contributor), Fabian Amman (Contributor) & Ivo Hofacker (Contributor)

  5 Apr 2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modeling RNA-RNA Interactions

  Maria Waldl (Contributor), Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  5 Apr 2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• MSF - Modulated Sub-graph Finder

  Mariam Rukhama Farman (Contributor), Ivo Hofacker (Contributor) & Fabian Amman (Contributor)

  11 Feb 2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• Bridge That Gap! – Insights from a long-term evolution experiment using strictly host-dependent bacteria

  Paul Herrera (Contributor), Lisa Natalie Schuster (Contributor), Markus Zojer (Contributor), Hyunsoo Na (Contributor), Jasmin Schwarz (Contributor), Florian Wascher (Contributor), Thomas Rattei (Contributor) & Matthias Horn (Contributor)

  2018

  Activity: Talks and presentations › Poster presentation › Science to Science

• IQ-TREE: Phylogenomic Interference by Maximum Likelihood

  Bui Quang Minh (Contributor), Arndt von Haeseler (Contributor), Lam Tung Nguyen (Contributor), Olga Chernomor (Contributor), Lars S. Jermiin (Contributor), Heiko Andreas Schmidt (Contributor), Stephen Crotty (Contributor) & Diep Thi Hoang (Contributor)

  16 Sep 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Approximate RNA folding kinetics

  Gregor Entzian (Contributor) & Ivo Hofacker (Contributor)

  22 Jun 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Efficient RNA 3D conformational space exploration and its applications

  Bernhard Thiel (Contributor), Peter Kerpedjiev (Contributor) & Ivo Hofacker (Contributor)

  30 May 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Detection and Annotation of functional RNA structures in the Viral Domain

  Roman Wilhelm Ochsenreiter (Contributor) & Ivo Hofacker (Contributor)

  30 May 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• RNA alignment and folding variations in and around the LocARNA package

  Sebastian Will (Contributor) & Ivo Hofacker (Contributor)

  20 Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Modelling transcriptional elongation

  Christina Wagner (Contributor) & Ivo Hofacker (Contributor)

  20 Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Detecting ncRNAs across all viral domains

  Roman Wilhelm Ochsenreiter (Contributor) & Ivo Hofacker (Contributor)

  20 Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Identification of functional antisense lncRNAs in plant genomes

  Veerendra Gadekar (Contributor) & Ivo Hofacker (Contributor)

  20 Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Conservation in RNA Folding Trajectories

  Maria Waldl (Contributor), Ronny Lorenz (Contributor), Ivo Hofacker (Contributor), Andrea Tanzer (Contributor), Yann Ponty (Contributor) & Inria Saclay (Contributor)

  20 Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Unifying the Phylogeny, Environmental Distribution and Molecular Diversity of Archaeal Ammonia Monooxygenases

  Ricardo Jorge Eloy Alves (Contributor), Minh Quang Bui (Contributor), Tim Urich (Contributor), Arndt von Haeseler (Contributor) & Christa Schleper (Contributor)

  Apr 2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• RG4 Structures in lncRNAs - Prediction, Conservation, Function

  Andrea Tanzer (Contributor), Ronny Lorenz (Contributor) & Ivo Hofacker (Contributor)

  2017

  Activity: Talks and presentations › Poster presentation › Science to Science

• Characterization of regulatory Flavivirus RNA structure elements

  Roman Wilhelm Ochsenreiter (Contributor), Andrea Tanzer (Contributor), Ivo Hofacker (Contributor) & Michael Wolfinger (Contributor)

  17 Oct 2016

  Activity: Talks and presentations › Poster presentation › Science to Science

• Flexible and universal multiple target nucleic acid sequence design

  Stefan Hammer (Contributor), Birgit Tschiatschek (Contributor), Christoph Flamm (Contributor), Ivo Hofacker (Contributor) & Sven Findeiß (Contributor)

  17 Oct 2016

  Activity: Talks and presentations › Poster presentation › Science to Science

• Complex models of sequence evolution require accurate estimators as exemplified with the invariable site plus Gamma model

  Minh Quang Bui (Contributor), Arndt von Haeseler (Contributor) & Lam Tung Nguyen (Contributor)

  15 Jun 2016

  Activity: Talks and presentations › Poster presentation › Science to Science

• Evolution of Flavivirus sfRNA

  Roman Wilhelm Ochsenreiter (Contributor), Andrea Tanzer (Contributor), Ivo Hofacker (Contributor) & Michael Wolfinger (Contributor)

  8 Jun 2016

  Activity: Talks and presentations › Poster presentation › Science to Science

• Probing assisted RNA folding

  Michael Wolfinger (Contributor), Ronny Lorenz (Contributor), Andrea Tanzer (Contributor) & Ivo Hofacker (Contributor)

  14 Apr 2016

  Activity: Talks and presentations › Poster presentation › Science to Science

• Visualizing Ensembles of Predicted RNA Structures and Their Base Pairing Probabilities

  Peter Kerpedjiev (Contributor) & Ivo Hofacker (Contributor)

  10 Jul 2015

  Activity: Talks and presentations › Poster presentation › Science to Science

• Phylogeny, diversity and evolution of the archaeal ammonia monooxygenase subunit A – a framework for classification and ecological analysis of ammonia-oxidising archaea

  Ricardo Jorge Eloy Alves (Contributor), Quang Minh Bui (Contributor), Tim Urich (Contributor), Arndt von Haeseler (Contributor) & Christa Schleper (Contributor)

  28 Jun 2015

  Activity: Talks and presentations › Poster presentation › Science to Science