Publications per year
Publications per year
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2020
Bi-alignments as models of incongruent evolution of RNA sequence and secondary structure
Waldl, M., Will, S., Wolfinger, M. T., Hofacker, I. L. & Stadler, P. F., 2020, Computational Intelligence Methods for Bioinformatics and Biostatistics: 16th International Meeting, CIBB 2019, Revised Selected Papers. Cazzaniga, P., Besozzi, D., Merelli, I. & Manzoni, L. (eds.). Cham: Springer, Vol. 12313. p. 159-170 12 p. (Lecture Notes in Computer Science, Vol. 12313).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding
Lorenz, R., Flamm, C., Hofacker, I. L. & Stadler, P. F., 2020, Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3: BIOINFORMATICS, 23-31, 2020 , Valletta, Malta. DeMaria, E., Fred, A. & Gamboa, H. (eds.). [Sétubal]: SciTePress, p. 23-31 9 p.Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
Open Access -
2019
Constraint maximal inter-molecular helix lengths within RNA-RNA interaction prediction improves bacterial sRNA target prediction
Gelhausen, R., Will, S., Hofacker, I. L., Backofen, R. & Raden, M., 1 Jan 2019, PROCEEDINGS OF THE 12TH INTERNATIONAL JOINT CONFERENCE ON BIOMEDICAL ENGINEERING SYSTEMS AND TECHNOLOGIES, VOL 3 (BIOINFORMATICS): Part of 12th International Joint Conference on Biomedical Engineering Systems and Technologies, BIOSTEC 20192019. De Maria, E., Fred, A. & Gamboa, H. (eds.). SciTePress, p. 131-140 10 p.Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
Open Access -
2018
A Generic Framework for Engineering Graph Canonization Algorithms
Andersen, J. L. & Merkle, D., 7 Jan 2018, 2018 Proceedings of the 20th Workshop on Algorithm Engineering and Experiments, ALENEX 2018. Venkatasubramanian, S. & Pagh, R. (eds.). SIAM PUBLICATIONS, p. 139-153 15 p.Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
Open Access -
2017
Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice
Jabbari, H., Wark, I., Montemagno, C. & Will, S., 21 Aug 2017, Leibniz International Proceedings in Informatics (LIPIcs). Schwartz, R. & Reinert, K. (eds.). Vol. 88. p. 12:1–12:13Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2016
A new phylogenetic tree sampling method for maximum parsimony bootstrapping and proof-of-concept implementation
Diep Thi Hoang, Le Sy Vinh, Flouri, T., Stamatakis, A., von Haeseler, A. & Bui Quang Minh, 2016, 2016 EIGHTH INTERNATIONAL CONFERENCE ON KNOWLEDGE AND SYSTEMS ENGINEERING (KSE). LeNguyen, M., Vinh, LS., Bui, LT., Nguyen, VG., Ong, YS. & Hirata, K. (eds.). IEEE, p. 1-6 6 p. (Proceedings International Conference on Knowledge and Systems Engineering).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2014
Computational design of a circular RNA with prion-like behaviour
Badelt, S., Flamm, C. & Hofacker, I., 2014, Proceedings of the 14th International Conference on the Synthesis and Simulation of Living Systems. MIT Press, p. 565-568Publications: Contribution to book › Contribution to proceedings
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Detection of RNA G-Quadruplexes within and across genomes
Tanzer, A., Lorenz, R. & Hofacker, I., Sep 2014, Book of Abstracts.Publications: Contribution to book › Contribution to proceedings
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2013
How to Multiply Dynamic Programming Algorithms
Siederdissen, C. H. Z., Hofacker, I. L. & Stadler, P. F., 2013, ADVANCES IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY. Setubal, JC. & Almeida, NF. (eds.). Berlin: Springer-Verlag Berlin, p. 82-93 12 p. (Lecture Notes in Computer Science, Vol. 8213).Publications: Contribution to book › Contribution to proceedings