The Comammox Research Platform

Publications

Publications per year 2017 2019 2020 2021 2024

• 31 Article

Publications per year

Publications per year

Search results

• 2024

  Growth of complete ammonia oxidizers on guanidine

  Palatinszky, M., Herbold, C. W., Sedlacek, C. J., Pühringer, D., Kitzinger, K., Giguere, A. T., Wasmund, K., Nielsen, P. H., Dueholm, M. K. D., Jehmlich, N., Gruseck, R., Legin, A., Kostan, J., Krasnici, N., Schreiner, C., Palmetzhofer, J., Hofmann, T., Zumstein, M., Djinović-Carugo, K., Daims, H., & 1 othersWagner, M., 19 Sep 2024, In: Nature. 633, p. 646-653 8 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Metabolite release by nitrifiers facilitates metabolic interactions in the ocean

  Bayer, B., Liu, S., Louie, K., Northen, T. R., Wagner, M., Daims, H., Carlson, C. A. & Santoro, A. E., 8 Sep 2024, (E-pub ahead of print) In: The ISME Journal. 27 p., wrae172.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access
• 2023

  Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira

  Zhang, Y., Liu, T., Li, M-M., Hua, Z-S., Evans, P., Qu, Y., Tan, S., Zheng, M., Lu, H., Jiao, J-Y., Lücker, S., Daims, H., Li, W-J. & Guo, J., 1 Jul 2023, In: The ISME Journal. 17, 7, p. 993-1003 11 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Nitrification in acidic and alkaline environments

  Ni, G., Leung, P. M., Daebeler, A., Guo, J., Hu, S., Cook, P., Nicol, G. W., Daims, H. & Greening, C., 11 Aug 2023, In: Essays in biochemistry. 67, 4, p. 753-768 16 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes

  Daebeler, A., Güell-Bujons, Q., Mooshammer, M., Zechmeister, T., Herbold, C. W., Richter, A., Wagner, M. & Daims, H., 1 May 2023, In: Environmental Microbiology. 25, 5, p. 1055-1067 13 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access
• 2022

  Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities

  Jung, M-Y., Sedlacek, C. J., Kits, K. D., Mueller, A. J., Rhee, S-K., Hink, L., Nicol, G. W., Bayer, B., Lehtovirta-Morley, L., Wright, C., de la Torre, J. R., Herbold, C. W., Pjevac, P., Daims, H. & Wagner, M., 1 Jan 2022, In: ISME Journal. 16, 1, p. 272-283 12 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• A nitrite-oxidising bacterium constitutively consumes atmospheric hydrogen

  Leung, P. M., Daebeler, A., Chiri, E., Hanchapola, I., Gillett, D. L., Schittenhelm, R. B., Daims, H. & Greening, C., 1 Sep 2022, In: The ISME Journal. 16, 9, p. 2213-2219 7 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Enhanced nitrogen and carbon removal in natural seawater by electrochemical enrichment in a bioelectrochemical reactor

  De La Fuente, M. J., De la Iglesia, P., Farias, L., Glasner, B., Torres-Rojas, F., Muñoz, D., Daims, H., Lukumbuzya, M. & Vargas, I. T., 1 Dec 2022, In: Journal of Environmental Management. 323, 11 p., 116294.

  Publications: Contribution to journal › Article › Peer Reviewed
• 2021

  Electrochemical enrichment of marine denitrifying bacteria to enhance nitrate metabolization in seawater

  De la Fuente, M. J., De la Iglesia, R., Farias, L., Daims, H., Lukumbuzya, M. & Vargas, I. T., 1 Aug 2021, In: Journal of Environmental Chemical Engineering. 9, 4, 9 p., 105604.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Flow-through stable isotope probing (Flow-SIP) minimizes cross-feeding in complex microbial communities

  Mooshammer, M., Kitzinger, K., Schintlmeister, A., Ahmerkamp, S., Nielsen, J. L., Nielsen, P. H. & Wagner, M., Jan 2021, In: ISME Journal. 15, 1, p. 348-353 6 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting

  Mueller, A. J., Jung, M-Y., Strachan, C., Herbold, C., Kirkegaard, R. H., Wagner, M. & Daims, H., Mar 2021, In: ISME Journal. 15, 3, p. 732-745 14 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Nitrogen Kinetic Isotope Effects of Nitrification by the Complete Ammonia Oxidizer Nitrospira inopinata

  Liu, S., Jung, M-Y., Zhang, S., Wagner, M., Daims, H. & Wanek, W., 8 Dec 2021, In: mSphere. 6, 6, 14 p., e0063421.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria

  Gottshall, E. Y., Bryson, S. J., Cogert, K. I., Landreau, M., Sedlacek, C. J., Stahl, D. A., Daims, H. & Winkler, M., 1 Sep 2021, In: Water Research. 202, 8 p., 117426.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access
• 2020

  A conformation-specific ON-switch for controlling CAR T cells with an orally available drug

  Zajc, C. U., Dobersberger, M., Schaffner, I., Mlynek, G., Pühringer, D., Salzer, B., Djinović-Carugo, K., Steinberger, P., De Sousa Linhares, A., Yang, N. J., Obinger, C., Holter, W., Traxlmayr, M. W. & Lehner, M., 30 Jun 2020, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 117, 26, p. 14926-14935 10 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems

  Yang, Y., Daims, H., Liu, Y., Herbold, C. W., Pjevac, P., Lin, J-G., Li, M. & Gu, J-D., 17 Mar 2020, In: mBio. 11, 2, 15 p., e03175-19.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria

  Lukumbuzya, M., Kristensen, J. M., Kitzinger, K., Pommerening-Röser, A., Nielsen, P. H., Wagner, M., Daims, H. & Pjevac, P., 1 Nov 2020, In: Water Research. 186, 10 p., 116372.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought

  Seneca Cardoso Da Silva, J., Pjevac, P., Canarini, A., Herbold, C. W., Zioutis, C., Dietrich, M., Simon, E., Prommer, J., Bahn, M., Poetsch, E. M., Wagner, M., Wanek, W. & Richter, A., Dec 2020, In: ISME Journal. 14, 12, p. 3038-3053 16 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira

  Daebeler, A., Kitzinger, K., Koch, H., Herbold, C., Steinfeder, M., Schwarz, J., Zechmeister, T., Karst, S. M., Albertsen, M., Nielsen, P. H., Wagner, M. & Daims, H., Dec 2020, In: ISME Journal. 14, 12, p. 2967-2979 13 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• PKAN neurodegeneration and residual PANK2 activities in patient erythrocytes

  Werning, M., Müllner, E. W., Mlynek, G., Dobretzberger, V., Djinovic-Carugo, K., Baron, D. M., Prokisch, H., Büchner, B., Klopstock, T. & Salzer, U., Aug 2020, In: Annals of clinical and translational neurology. 7, 8, p. 1340-1351 12 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean

  Kitzinger, K., Marchant, H. K., Bristow, L. A., Herbold, C. W., Padilla, C. C., Kidane, A. T., Littmann, S., Daims, H., Pjevac, P., Stewart, F. J., Wagner, M. & Kuypers, M. M. M., 7 Feb 2020, In: Nature Communications. 11, 1, 12 p., 767.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Tailored Suits Fit Better: Customized Protein Crystallization Screens

  Mlynek, G., Kostan, J., Leeb, S. & Djinović-Carugo, K., Feb 2020, In: Crystal Growth & Design. 20, 2, p. 984-994 11 p.

  Publications: Contribution to journal › Article › Peer Reviewed

• Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth

  Sedlacek, C., Giguere, A., Dobie, M. D., Mellbye, B. L., Ferrell, R. V., Wöbken, D., Sayavedra-Soto, L. A., Bottomley, P. J., Daims, H., Wagner, M. & Pjevac, P., 14 Jan 2020, In: mSystems. 5, 1, 14 p., e00562-19.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• X-ray-induced photoreduction of heme metal centers rapidly induces active-site perturbations in a protein-independent manner

  Pfanzagl, V., Beale, J. H., Michlits, H., Schmidt, D., Gabler, T., Obinger, C., Djinović-Carugo, K. & Hofbauer, S., 25 Sep 2020, In: Journal of Biological Chemistry. 295, 39, p. 13488-13501 14 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access
• 2019

  A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms

  Lukumbuzya, M., Schmid, M., Pjevac, P. & Daims, H., 19 Jun 2019, In: Frontiers in Microbiology. 10, 13 p., 1383.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• An automated Raman-based platform for the sorting of live cells by functional properties

  Lee, K. S., Palatinszky, M., Cardoso Pereira, M. D. F., Nguyen, J., Fernandez, V., Mueller, A. J., Menolascina, F., Daims, H., Berry, D., Wagner, M. & Stocker, R., Jun 2019, In: Nature Microbiology. 4, 6, p. 1035-1048 14 p.

  Publications: Contribution to journal › Article › Peer Reviewed

• Cometabolic biotransformation and microbial-mediated abiotic transformation of sulfonamides by three ammonia oxidizers

  Zhou, L-J., Han, P., Yu, Y., Wang, B., Men, Y., Wagner, M. & Wu, Q., 1 Aug 2019, In: Water Research. 159, p. 444-453 10 p.

  Publications: Contribution to journal › Article › Peer Reviewed

• HspB1 phosphorylation regulates its intramolecular dynamics and mechanosensitive molecular chaperone interaction with filamin C

  Collier, M. P., Alderson, T. R., de Villiers, C. P., Nicholls, D., Gastall, H. Y., Allison, T. M., Degiacomi, M. T., Jiang, H., Mlynek, G., Fuerst, D. O., van der Ven, P. F. M., Djinovic-Carugo, K., Baldwin, A. J., Watkins, H., Gehmlich, K. & Benesch, J. L. P., May 2019, In: Science Advances. 5, 5, 13 p., aav8421.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Indications for enzymatic denitrification to N2O at low pH in an ammonia-oxidizing archaeon

  Jung, M-Y., Gwak, J-H., Rohe, L., Giesemann, A., Kim, J-G., Well, R., Madsen, E. L., Herbold, C., Wagner, M. & Rhee, S. K., Oct 2019, In: The ISME Journal: multidisciplinary journal of microbial ecology. 13, 10, p. 2633-2638 6 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata

  Kits, K., Jung, M-Y., Vierheilig, J., Pjevac, P., Sedlacek, C. J., Liu, S., Herbold, C., Stein, L. Y., Richter, A., Wissel, H., Brueggemann, N., Wagner, M. & Daims, H., 23 Apr 2019, In: Nature Communications. 10, 1, 12 p., 1836.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access

• Specific Micropollutant Biotransformation Pattern by the Comammox Bacterium Nitrospira inopinata

  Han, P., Yu, Y., Zhou, L-J., Tian, Z., Li, Z., Hou, L., Liu, M., Wu, Q., Wagner, M. & Men, Y., 6 Aug 2019, In: Environmental Science & Technology. 53, 15, p. 8695-8705 11 p.

  Publications: Contribution to journal › Article › Peer Reviewed
• 2017

  Molecular Mechanism of Enzymatic Chlorite Detoxification: Insights from Structural and Kinetic Studies

  Schaffner, I., Mlynek, G., Flego, N., Pühringer, D., Libiseller-Egger, J., Coates, L., Hofbauer, S., Bellei, M., Furtmüller, P. G., Battistuzzi, G., Smulevich, G., Djinović-Carugo, K. & Obinger, C., 3 Nov 2017, In: ACS Catalysis. 7, 11, p. 7962-7976 15 p.

  Publications: Contribution to journal › Article › Peer Reviewed

  Open Access