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2024
Metabolic potential of Nitrososphaera-associated clades
Bei, Q., Reitz, T., Schädler, M., Hodgskiss, L. H., Peng, J., Schnabel, B., Buscot, F., Eisenhauer, N., Schleper, C. & Heintz-Buschart, A., 14 May 2024, (E-pub ahead of print) In: The ISME Journal. 18, 1, wrae086.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Minimal and hybrid hydrogenases are active from archaea
Greening, C., Cabotaje, P. R., Valentin Alvarado, L. E., Leung, P. M., Land, H., Rodrigues de Oliveira, T., Ponce-Toledo, R. I., Senger, M., Klamke, M. A., Milton, M., Lappan, R., Mullen, S., West-Roberts, J., Mao, J., Song, J., Schoelmerich, M., Stairs, C. W., Schleper, C., Grinter, R., Spang, A., & 2 others, 20 Jun 2024, In: Cell. 187, 13, p. 3357-3372.e19Publications: Contribution to journal › Article › Peer Reviewed
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Reevaluation and novel insights into amino sugar and neutral sugar necromass biomarkers in archaea, bacteria, fungi, and plants
Salas, E., Gorfer, M., Bandian, D., Eichorst, S. A., Schmidt, H., Horak, J., Rittmann, S. K-M. R., Schleper, C., Reischl, B., Pribasnig, T., Jansa, J., Kaiser, C. & Wanek, W., 1 Jan 2024, In: Science of the Total Environment. 906, 10 p., 167463.Publications: Contribution to journal › Article › Peer Reviewed
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2023
Actin cytoskeleton and complex cell architecture in an Asgard archaeon
Rodrigues de Oliveira, T., Wollweber, F., Ponce-Toledo, R. I., Xu, J., Rittmann, S. K. M. R., Klingl, A., Pilhofer, M. & Schleper, C., 12 Jan 2023, In: Nature. 613, 7943, p. 332-339 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Analysis of biomass productivity and physiology of Nitrososphaera viennensis grown in continuous culture
Melcher, M., Hodgskiss, L., Mardini, M. A., Schleper, C. & Rittmann, S. K-M. R., 16 Feb 2023, In: Frontiers in Microbiology. 14, 1076342.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Unexpected complexity of the ammonia monooxygenase in archaea
Hodgskiss, L. H., Melcher, M., Kerou, M., Chen, W., Ponce-Toledo, R. I., Savvides, S. N., Wienkoop, S., Hartl, M. & Schleper, C., Apr 2023, In: The ISME Journal. 17, 4, p. 588-599 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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2022
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution
Grau-Bové, X., Navarrete, C., Chiva, C., Pribasnig, T., Antó, M., Torruella, G., Galindo, L. J., Lang, B. F., Moreira, D., López-Garcia, P., Ruiz-Trillo, I., Schleper, C., Sabidó, E. & Sebé-Pedrós, A., Jul 2022, In: Nature Ecology & Evolution. 6, 7, p. 1007-1023 17 p.Publications: Contribution to journal › Article › Peer Reviewed
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Isolation and Characterization of Cell Envelope Fragments Comprising Archaeal S-Layer Proteins
Pfeifer, K., Ehmoser, E-K., Rittmann, S. K-M. R., Schleper, C., Pum, D., Sleytr, U. B. & Schuster, B., 21 Jul 2022, In: Nanomaterials. 12, 14, 13 p., 2502.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2021
Comparative CRISPR type III-based knockdown of essential genes in hyperthermophilic Sulfolobales and the evasion of lethal gene silencing
Zink, I. A., Fouqueau, T., Tarrason Risa, G., Werner, F., Baum, B., Bläsi, U. & Schleper, C., 2021, In: RNA Biology. 18, 3, p. 421-434 14 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages
Kerou, M., Ponce-Toledo, R. I., Zhao, R., Abby, S. S., Hirai, M., Nomaki, H., Takaki, Y., Nunoura, T., Jørgensen, S. L. & Schleper, C., Sep 2021, In: The ISME Journal: multidisciplinary journal of microbial ecology. 15, 9, p. 2792-2808 17 p.Publications: Contribution to journal › Article › Peer Reviewed
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Linking 16S rRNA Gene Classification to amoA Gene Taxonomy Reveals Environmental Distribution of Ammonia-Oxidizing Archaeal Clades in Peatland Soils
Wang, H., Bagnoud, A., Ponce-Toledo, R. I., Kerou, M., Weil, M., Schleper, C. & Urich, T., Aug 2021, In: mSystems. 6, 4, 13 p., e0054621.Publications: Contribution to journal › Article › Peer Reviewed
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2020
Ancestral Reconstructions Decipher Major Adaptations of Ammonia-Oxidizing Archaea upon Radiation into Moderate Terrestrial and Marine Environments
Abby, S. S., Kerou, M. & Schleper, C., 13 Oct 2020, In: mBio. 11, 5, p. 1-20 20 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Copper limiting threshold in the terrestrial ammonia oxidizing archaeon Nitrososphaera viennensis
Reyes, C., Hodgskiss, L., Baars, O., Kerou, M., Bayer, B., Schleper, C. & Krämer, S., Jun 2020, In: Research in Microbiology. 171, 3-4, p. 134-142 9 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation
Reyes, C., Hodgskiss, L., Kerou, M., Pribasnig, T., Abby, S., Bayer, B., Krämer, S. & Schleper, C., Nov 2020, In: The ISME Journal: multidisciplinary journal of microbial ecology. 14, 11, p. 2659-2674 16 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Geochemical transition zone powering microbial growth in subsurface sediments
Zhao, R., Mogollón, J. M., Abby, S. S., Schleper, C., Biddle, J. F., Roerdink, D. L., Thorseth, I. H. & Jørgensen, S. L., 2020, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 117, 51, p. 32617-32626 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrogen Isotope Fractionation During Archaeal Ammonia Oxidation: Coupled Estimates From Measurements of Residual Ammonium and Accumulated Nitrite
Mooshammer, M., Alves, R. J. E., Bayer, B., Melcher, M., Stieglmeier, M., Jochum, L., Rittmann, S. K. M. R., Watzka, M., Schleper, C., Herndl, G. J. & Wanek, W., 28 Jul 2020, In: Frontiers in Microbiology. 11, 9 p., 1710.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2019
Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures
Alves, R. J. E., Kerou, M., Zappe, A., Bittner, R., Abby, S. S., Schmidt, H. A., Pfeifer, K. & Schleper, C., 2019, In: Frontiers in Microbiology. 10, 16 p., 1571.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Archaeal nitrification is a key driver of high nitrous oxide emissions from arctic peatlands
Siljanen, H. M. P., Alves, R. J. E., Ronkainen, J. G., Lamprecht, R. E., Bhattarai, H. R., Bagnoud, A., Marushchak, M. E., Martikainen, P. J., Schleper, C. & Biasi, C., Oct 2019, In: Soil Biology and Biochemistry. 137, 10 p., 107539.Publications: Contribution to journal › Article › Peer Reviewed
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CRISPR-mediated gene silencing reveals involvement of the archaeal S-layer in cell division and virus infection
Zink, I. A., Pfeifer, K., Wimmer, E., Sleytr, U. B., Schuster, B. & Schleper, C., 22 Oct 2019, In: Nature Communications. 10, 1, p. 4797 14 p., 4797.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Exploring the microbial biotransformation of extraterrestrial material on nanometer scale
Milojevic, T., Koelbl, D., Ferriere, L., Albu, M., Kish, A., Flemming, R. L., Koeberl, C., Blazevic, A., Zebec, Z., Rittmann, S. K-M. R., Schleper, C., Pignitter, M., Somoza, V., Schimak, M. P. & Rupert, A. N., 2 Dec 2019, In: Scientific Reports. 9, 1, 11 p., 18028.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Indications for a moonlighting function of translation factor aIF5A in the crenarchaeum Sulfolobus solfataricus
Bassani, F., Zink, I. A., Pribasnig, T., Wolfinger, M. T., Romagnoli, A., Resch, A., Schleper, C., Bläsi, U. & La Teana, A., 4 May 2019, In: RNA Biology. 16, 5, p. 675-685 11 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota
Manoharan, L., Kozlowski, J. A., Murdoch, R. W., Löffler, F. E., Sousa, F. L. & Schleper, C., 10 Sep 2019, In: mBio. 10, 5, 15 p., e02039-19.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2018
A plant-microbe interaction framework explaining nutrient effects on primary production
Čapek, P., Manzoni, S., Kaštovská, E., Wild, B., Diáková, K., Bárta, J., Schnecker, J., Biasi, C., Martikainen, P. J., Alves, R. J. E., Guggenberger, G., Gentsch, N., Hugelius, G., Palmtag, J., Mikutta, R., Shibistova, O., Urich, T., Schleper, C., Richter, A. & Šantrůčková, H., Oct 2018, In: Nature Ecology & Evolution. 2, 10, p. 1588-1596 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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Biological methane production under putative Enceladus-like conditions
Taubner, R-S., Pappenreiter, P., Zwicker, J., Smrzka, D., Pruckner, C., Kolar, P., Bernacchi, S., Seifert, A. H., Krajete, A., Bach, W., Peckmann, J., Paulik, C., Firneis, M. G., Schleper, C. & Rittmann, S. K-M. R., 27 Feb 2018, In: Nature Communications. 9, 1, 11 p., 748 .Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Evidence for archaeal methanogenesis within veins at the onshore serpentinite-hosted Chimaera seeps, Turkey
Zwicker, J., Birgel, D., Bach, W., Richoz, S., Smrzka, D., Grasemann, B., Gier, S., Schleper, C., Rittmann, S. K-M. R., Kosun, E. & Peckmann, J., 20 Apr 2018, In: Chemical Geology. 483, p. 567-580 14 p.Publications: Contribution to journal › Article › Peer Reviewed
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Holistic Assessment of Rumen Microbiome Dynamics through Quantitative Metatranscriptomics Reveals Multifunctional Redundancy during Key Steps of Anaerobic Feed Degradation
Söllinger, A., Tveit, A. T., Poulsen, M., Noel, S. J., Bengtsson, M., Bernhardt, J., Frydendahl Hellwing, A. L., Lund, P., Riedel, K., Schleper, C., Højberg, O. & Urich, T., 18 Aug 2018, In: mSystems. 3, 4, 19 p., e00038-18.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Intact polar lipid and core lipid inventory of the hydrothermal vent methanogens Methanocaldococcus villosus and Methanothermococcus okinawensis
Baumann, L., Taubner, R-S., Bauersachs, T., Steiner, M., Schleper, C., Peckmann, J., Rittmann, S. K-M. R. & Birgel, D., Dec 2018, In: Organic Geochemistry. 126, p. 33-42 10 p.Publications: Contribution to journal › Article › Peer Reviewed
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Microbial diversity of a closed salt lagoon in the Puertecitos area, Upper Gulf of California
Kozlowski, J., Johnson, M. E., Ledesma-Vázquez, J., Birgel, D., Peckmann, J. & Schleper, C., 25 Jun 2018, In: Ciencias Marinas. 44, 2, p. 71-90 20 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
Abby, S. S., Melcher, M., Kerou, M., Krupovic, M., Stieglmeier, M., Rossel, C., Pfeifer, K. & Schleper, C., 26 Jan 2018, In: Frontiers in Microbiology. 9, 28.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Significance of dark CO2 fixation in arctic soils
Santruckova, H., Kotas, P., Barta, J., Urich, T., Capek, P., Palmtag, J., Alves, R. J. E., Biasi, C., Diakova, K., Gentsch, N., Gittel, A., Guggenberger, G., Hugelius, G., Lashchinsky, N., Martikainen, P. J., Mikutta, R., Schleper, C., Schnecker, J., Schwab, C., Shibistova, O., & 2 others, Apr 2018, In: Soil Biology and Biochemistry. 119, p. 11-21 11 p.Publications: Contribution to journal › Article › Peer Reviewed
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Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
Alves, R. J. E., Minh, B. Q., Urich, T., von Haeseler, A. & Schleper, C., 17 Apr 2018, In: Nature Communications. 9, 1, 17 p., 1517.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2017
Chemotaxonomic characterisation of the thaumarchaeal lipidome
Elling, F. J., Könneke, M., Nicol, G. W., Stieglmeier, M., Bayer, B., Spieck, E., de la Torre, J. R., Becker, K. W., Thomm, M., Prosser, J. I., Herndl, G. J., Schleper, C. & Hinrichs, K-U., Jul 2017, In: Environmental Microbiology. 19, 7, p. 2681-2700 20 p.Publications: Contribution to journal › Article › Peer Reviewed
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Das Archaeon Nitrososphaera viennensis: Unbekannte Helden im Stickstoffkreislauf.
Translated title of the contribution :Unkown heroes in the global nitrogen cycle - Nitrososphaera viennensis Publications: Contribution to journal › Article › Peer Reviewed
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2016
A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment
Jung, M-Y., Kim, J-G., Sinninghe Damsté, J. S., Rijpstra, W. I. C., Madsen, E. L., Kim, S-J., Hong, H., Si, O-J., Kerou, M., Schleper, C. & Rhee, S-K., Dec 2016, In: Environmental Microbiology Reports. 8, 6, p. 983-992 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Efficient CRISPR-Mediated Post-Transcriptional Gene Silencing in a Hyperthermophilic Archaeon Using Multiplexed crRNA Expression
Zebec, Z., Zink, I. A., Kerou, M. & Schleper, C., 13 Oct 2016, In: G3: Genes, Genomes, Genetics. 6, 10, p. 3161-3168 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota
Kozlowski, J. A., Stieglmeier, M., Schleper, C., Klotz, M. G. & Stein, L. Y., Aug 2016, In: The ISME Journal: multidisciplinary journal of microbial ecology. 10, 8, p. 1836-1845 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Phylogenetic and genomic analysis of Methanomassiliicoccales in wetlands and animal intestinal tracts reveals clade-specific habitat preferences
Söllinger, A., Schwab, C., Weinmaier, T., Loy, A., Tveit, A. T., Schleper, C. & Urich, T., 1 Jan 2016, In: FEMS microbiology ecology. 92, 1, 12 p., fiv149.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
Bayer, B., Vojvoda, J., Offre, P., Eloy Alves, R. J., Elisabeth, N. H., Garcia, J. A., Volland, J-M., Srivastava, A., Schleper, C. & Herndl, G., May 2016, In: The ISME Journal: multidisciplinary journal of microbial ecology. 10, 5, p. 1051-1063 13 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Plant-derived compounds stimulate the decomposition of organic matter in arctic permafrost soils
Wild, B., Gentsch, N., Čapek, P., Diáková, K., Alves, R. J. E., Bárta, J., Gittel, A., Hugelius, G., Knoltsch, A., Kuhry, P., Lashchinskiy, N., Mikutta, R., Palmtag, J., Schleper, C., Schnecker, J., Shibistova, O., Takriti, M., Torsvik, V. L., Urich, T., Watzka, M., & 3 others, 9 May 2016, In: Scientific Reports. 6, 11 p., 25607.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
Kerou, M., Offre, P., Valledor, L., Abby, S. S., Melcher, M., Nagler, M., Weckwerth, W. & Schleper, C., 6 Dec 2016, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 113, 49, p. E7937-E7946 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2015
Assessing the Ecophysiology of Methanogens in the Context of Recent Astrobiological and Planetological Studies
Taubner, R-S., Schleper, C., Firneis, M. G. & Rittmann, S. K-M. R., 3 Dec 2015, In: Life. 5, 4, p. 1652-1686 35 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Complex archaea that bridge the gap between prokaryotes and eukaryotes
Spang, A., Saw, J. H., Jorgensen, S., Zaremba-Niedzwiedzka, K., Martijn, J., Lind, A. E., van Eijk, R., Schleper, C., Guy, L. & Ettema, T. J. G., 14 May 2015, In: Nature. 521, 7551, p. 173-179 7 p.Publications: Contribution to journal › Article › Peer Reviewed
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Highlights aus der dritten Domäne - die Archaea
Translated title of the contribution :Highlights from the third domain - The Archaea Publications: Contribution to journal › Article › Peer Reviewed
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Inhibitory effects of C2 to C10 1-alkynes on ammonia oxidation in two Nitrososphaera species
Taylor, A. E., Taylor, K., Tennigkeit, B., Palatinszky, M., Stieglmeier, M., Myrold, D. D., Schleper, C., Wagner, M. & Bottomley, P. J., Mar 2015, In: Applied and Environmental Microbiology. 81, 6, p. 1942-1948 7 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Intestinal Epithelial Cell Tyrosine Kinase 2 Transduces IL-22 Signals To Protect from Acute Colitis
Hainzl, E., Stockinger, S., Rauch, I., Heider, S., Berry, D., Lassnig, C., Schwab, C., Rosebrock, F., Milinovich, G., Schlederer, M., Wagner, M., Schleper, C., Loy, A., Urich, T., Kenner, L., Han, X., Decker, T., Strobl, B. & Müller, M., 15 Nov 2015, In: Journal of Immunology. 195, 10, p. 5011-5024 14 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Intestinal Microbiota Signatures Associated with Inflammation History in Mice Experiencing Recurring Colitis
Berry, D., Kuzyk, O., Rauch, I., Heider, S., Schwab, C., Hainzl, E., Decker, T., Müller, M., Strobl, B., Schleper, C., Urich, T., Wagner, M., Kenner, L. & Loy, A., 2015, In: Frontiers in Microbiology. 6, p. 1408 01408.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
The effect of warming on the vulnerability of subducted organic carbon in arctic soils
Capek, P., Diakova, K., Dickopp, J-E., Barta, J., Wild, B., Schnecker, J., Alves, R. J. E., Aiglsdorfer, S., Guggenberger, G., Gentsch, N., Hugelius, G., Lashchinsky, N., Gittel, A., Schleper, C., Mikutta, R., Palmtag, J., Shibistova, O., Urich, T., Richter, A. & Santruckova, H., Nov 2015, In: Soil Biology and Biochemistry. 90, p. 19-29 11 p.Publications: Contribution to journal › Article › Peer Reviewed
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2014
Aerobic nitrous oxide production through N-nitrosating hybrid formation in ammonia-oxidizing archaea
Stieglmeier, M., Mooshammer, M., Kitzler, B., Wanek, W., Zechmeister-Boltenstern, S., Richter, A. & Schleper, C., 2014, In: The ISME Journal: multidisciplinary journal of microbial ecology. 8, 5, p. 1135-1146 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Biochar Decelerates Soil Organic Nitrogen Cycling but Stimulates Soil Nitrification in a Temperate Arable Field Trial
Prommer, J., Wanek, W., Hofhansl, F., Trojan, D., Offre, P., Urich, T., Schleper, C., Sassmann, S., Kitzler, B., Soja, G. & Hood-Nowotny, R. C., 30 Jan 2014, In: PLoS ONE. 9, 1, p. 1-16 17 p., 86388.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
CRISPR-mediated targeted mRNA degradation in the archaeon Sulfolobus solfataricus
Zebec, Z., Manica, A., Zhang, J., White, M. F. & Schleper, C., Apr 2014, In: Nucleic Acids Research. 42, 8, p. 5280-5288 9 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access