Publications per year
Publications per year
Publications
- 18 results
Search results
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2023
On the Realisability of Chemical Pathways
Andersen, J. L., Banke, S., Fagerberg, R., Flamm, C., Merkle, D. & Stadler, P., Oct 2023, Bioinformatics Research and Applications - 19th International Symposium, ISBRA 2023, Proceedings. Guo, X., Mangul, S., Patterson, M. & Zelikovsky, A. (eds.). Springer Singapore, p. 409–419 11 p. (Lecture Notes in Computer Science, Vol. 14248).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2020
Efficient Computation of Base-pairing Probabilities in Multi-strand RNA Folding
Lorenz, R., Flamm, C., Hofacker, I. L. & Stadler, P. F., 2020, Proceedings of the 13th International Joint Conference on Biomedical Engineering Systems and Technologies: Volume 3: BIOINFORMATICS, 23-31, 2020 , Valletta, Malta. DeMaria, E., Fred, A. & Gamboa, H. (eds.). [Sétubal]: SciTePress, p. 23-31 9 p.Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
Open Access -
2017
Chemical Graph Transformation with Stereo-Information
Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P., 18 Jul 2017, GRAPH TRANSFORMATION, ICGT 2017: Graph Transformation:Conference Proceedings of the 10th International Conference on Graph Transformation. de Lara, J. & Plump, D. (eds.). SPRINGER INT PUBLISHING AG, Vol. 10373. p. 54-69 16 p.Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2016
A Software Package for Chemically Inspired Graph Transformation
Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2016, Graph Transformation. Minas, M. & Echahed, R. (eds.). SPRINGER INT PUBLISHING AG, p. 73-88 16 p. (Lecture Notes in Computer Science, Vol. 9761).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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Automatic Inference of Graph Transformation Rules Using the Cyclic Nature of Chemical Reactions
Flamm, C., Merkle, D., Stadler, P. F. & Thorsen, U., 2016, Graph Transformation - 9th International Conference, ICGT 2016 in Memory of Hartmut Ehrig, Held as Part of STAF 2016, Proceedings. Minas, M. & Echahed, R. (eds.). Cham: SPRINGER INT PUBLISHING AG, p. 206-222 17 p. (Lecture Notes in Computer Science, Vol. 9761).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2014
50 Shades of Rule Composition: From Chemical Reactions to Higher Levels of Abstraction
Andersen, J. L., Flamm, C., Merkle, D. & Stadler, P. F., 2014, Formal Methods in Macro-Biology: First International Conference, FMMB 2014, Nouméa, New Caledonia, September 22-24, 2014. Proceedings. Fages, F. & Piazza, C. (eds.). Cham: SPRINGER INT PUBLISHING AG, p. 117-135 (Lecture Notes in Computer Science, Vol. 8738).Publications: Contribution to book › Contribution to proceedings
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Computational design of a circular RNA with prion-like behaviour
Badelt, S., Flamm, C. & Hofacker, I., 2014, Proceedings of the 14th International Conference on the Synthesis and Simulation of Living Systems. MIT Press, p. 565-568Publications: Contribution to book › Contribution to proceedings
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Towards an Optimal DNA-Templated Molecular Assembler
Andersen, J. L., Flamm, C., Hanczyc, M. M. & Merkle, D., 2014, Proceedings of the 14th International Conference on the Synthesis and Simulation of Living Systems. MIT Press, p. 557-564Publications: Contribution to book › Contribution to proceedings
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2013
Barrier Trees for Metabolic Adjustment Landscapes
Flamm, C. & Merkle, D., Sep 2013, Conference Proceedings. Lió, P., Miglino, O., Nicosia, G., Nolfi, S. & Pavone, M. (eds.).Publications: Contribution to book › Contribution to proceedings
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Exploring Prebiotic Chemistry Space
Flamm, C., Merkle, D. & Andersen, J. L., Sep 2013, Conference Proceedings. Lió, P., Miglino, O., Nicosia, G., Nolfi, S. & Pavone, M. (eds.).Publications: Contribution to book › Contribution to proceedings
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2009
2d projections of RNA folding landscapes
Lorenz, R., Hofacker, I. & Flamm, C., 2009, German Conference on Bioinformatics 2009. Grosse, I., Neumann, S., Posch, S., Schreiber, F. & Stadler, P. F. (eds.). Bonn: Gesellschaft für Informatik e.V., p. 11-20 10 p.Publications: Contribution to book › Contribution to proceedings
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A Sequence-to-Function Map for Ribozyme-catalyzed Metabolisms
Ullrich, A. & Flamm, C., 2009, Proceedings of European Conference on Artificial Life (ECAL), Lect. Notes Comp. Sci. 2009.. Unknown publisherPublications: Contribution to book › Contribution to proceedings
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2008
SBML ODE Solver Library: Extensions for Inverse Analysis
Flamm, C., Machne, R., Lu, J. & Müller, S., 2008, Proceedings of the Fifth International Workshop on Computational Systems Biology, WCSB 2008: June 11-13, 2008 Leipzig, Germany. Ahdesmäki, M. (ed.). Tampere: Tampere International Center for Signal Processing, p. 93-96 4 p.Publications: Contribution to book › Contribution to proceedings
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2007
Saddles and Barrier in Landscapes of Generalized Search Operators
Hofacker, I., Flamm, C., Stadler, P. & Stadler, B. M. R., 2007, Proceedings of Foundations of Genetic Algorithms FOGA9. Unknown publisher, p. 194-212 19 p.Publications: Contribution to book › Contribution to proceedings
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2006
Visualization of lattice-based protein folding simulations
Pötzsch, S., Scheuermann, G., Wolfinger, M. T., Flamm, C. & Stadler, P. F., 1 Dec 2006, Information Visualization 2006, IV06. p. 89-94 6 p. 1648246Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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2005
CelloS: A multi-level approach to evolutionary dynamics
Attolini, C. S-O., Stadler, P. & Flamm, C., 2005, Advances in Artificial Life: 8th European Conference, ECAL 2005, Canterbury, UK, September 5-9, 2005 : proceedings. Capcarrere, M. S. (ed.). Berlin, Heidelberg: Springer-Verlag Berlin, p. 500-509 10 p. (Lecture Notes in Computer Science, Vol. 3630).Publications: Contribution to book › Contribution to proceedings
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Explicit collision simulation of chemical reactions in a graph based artificial chemistry
Benkö, G., Flamm, C. & Stadler, P., 2005, Advances in Artificial Life: 8th European Conference, ECAL 2005, Canterbury, UK, September 5-9, 2005 : proceedings. Capcarrere, M. S. (ed.). Berlin, Heidelberg: Springer, p. 725-733 9 p. (Lecture Notes in Computer Science, Vol. 3630).Publications: Contribution to book › Contribution to proceedings
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2003
Generic properties of chemical networks: Artificial chemistry based on graph rewriting
Benkö, G., Flamm, C. & Stadler, P., 2003, Advances in Artificial Life. ECAL 2003. Berlin, Heidelberg: Springer-Verlag Berlin, p. 10-19 10 p. (Lecture Notes in Computer Science, Vol. 2801).Publications: Contribution to book › Contribution to proceedings