Publications per year
Publications per year
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2024
Co-occurring nitrifying symbiont lineages are vertically inherited and widespread in marine sponges
Glasl, B., Luter, H. M., Damjanovic, K., Kitzinger, K., Mueller, A. J., Mahler, L., Engelberts, J. P., Rix, L., Osvatic, J. T., Hausmann, B., Séneca, J., Daims, H., Pjevac, P. & Wagner, M., 27 Apr 2024, In: The ISME Journal. 18, 1, 47 p., wrae069.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Growth of complete ammonia oxidizers on guanidine
Palatinszky, M., Herbold, C. W., Sedlacek, C. J., Pühringer, D., Kitzinger, K., Giguere, A. T., Wasmund, K., Nielsen, P. H., Dueholm, M. K. D., Jehmlich, N., Gruseck, R., Legin, A., Kostan, J., Krasnici, N., Schreiner, C., Palmetzhofer, J., Hofmann, T., Zumstein, M., Djinović-Carugo, K., Daims, H., & 1 others, 19 Sept 2024, In: Nature. 633, 8030, p. 646-653 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Metabolic and phylogenetic diversity in the phylum Nitrospinota revealed by comparative genome analyses
Kop, L. F. M., Koch, H., Jetten, M. S. M., Daims, H. & Lücker, S., 10 Jan 2024, (E-pub ahead of print) In: ISME Communications. 4, 1, 15 p., ycad017.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Metabolite release by nitrifiers facilitates metabolic interactions in the ocean
Bayer, B., Liu, S., Louie, K., Northen, T. R., Wagner, M., Daims, H., Carlson, C. A. & Santoro, A. E., 8 Sept 2024, In: The ISME Journal. 18, 1, 27 p., wrae172.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Sustainable wastewater management through nitrogen-cycling microorganisms
Liu, T., Duan, H., Lücker, S., Zheng, M., Daims, H., Yoan, Z. & Jianhua, G., 14 Oct 2024, In: Nature Water (Nat Water). 2, p. 936–952 16 p.Publications: Contribution to journal › Article › Peer Reviewed
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2023
Complete Genome Sequence of Nitrospina watsonii 347, Isolated from the Black Sea
Kop, L. F. M., Koch, H., Spieck, E., van Alen, T., Cremers, G., Daims, H. & Lücker, S., 18 Apr 2023, In: Microbiology resource announcements. 12, 4, 2 p., e0007823.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Cultivation and genomic characterization of novel and ubiquitous marine nitrite-oxidizing bacteria from the Nitrospirales
Mueller, A. J., Daebeler, A., Herbold, C. W., Kirkegaard, R. H. & Daims, H., Nov 2023, In: The ISME Journal. 17, 11, p. 2123-2133 11 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Hot spring distribution and survival mechanisms of thermophilic comammox Nitrospira
Zhang, Y., Liu, T., Li, M-M., Hua, Z-S., Evans, P., Qu, Y., Tan, S., Zheng, M., Lu, H., Jiao, J-Y., Lücker, S., Daims, H., Li, W-J. & Guo, J., 1 Jul 2023, In: The ISME Journal. 17, 7, p. 993-1003 11 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrification in acidic and alkaline environments
Ni, G., Leung, P. M., Daebeler, A., Guo, J., Hu, S., Cook, P., Nicol, G. W., Daims, H. & Greening, C., 11 Aug 2023, In: Essays in biochemistry. 67, 4, p. 753-768 16 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Rapid nitrification involving comammox and canonical Nitrospira at extreme pH in saline-alkaline lakes
Daebeler, A., Güell-Bujons, Q., Mooshammer, M., Zechmeister, T., Herbold, C. W., Richter, A., Wagner, M. & Daims, H., 1 May 2023, In: Environmental Microbiology. 25, 5, p. 1055-1067 13 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2022
Ammonia-oxidizing archaea possess a wide range of cellular ammonia affinities
Jung, M-Y., Sedlacek, C. J., Kits, K. D., Mueller, A. J., Rhee, S-K., Hink, L., Nicol, G. W., Bayer, B., Lehtovirta-Morley, L., Wright, C., de la Torre, J. R., Herbold, C. W., Pjevac, P., Daims, H. & Wagner, M., 1 Jan 2022, In: ISME Journal. 16, 1, p. 272-283 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
A nitrite-oxidising bacterium constitutively consumes atmospheric hydrogen
Leung, P. M., Daebeler, A., Chiri, E., Hanchapola, I., Gillett, D. L., Schittenhelm, R. B., Daims, H. & Greening, C., 1 Sept 2022, In: The ISME Journal. 16, 9, p. 2213-2219 7 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Enhanced nitrogen and carbon removal in natural seawater by electrochemical enrichment in a bioelectrochemical reactor
De La Fuente, M. J., De la Iglesia, P., Farias, L., Glasner, B., Torres-Rojas, F., Muñoz, D., Daims, H., Lukumbuzya, M. & Vargas, I. T., 1 Dec 2022, In: Journal of Environmental Management. 323, 11 p., 116294.Publications: Contribution to journal › Article › Peer Reviewed
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Specific Localization and Quantification of the Oligo-Mouse-Microbiota (OMM12 ) by Fluorescence In Situ Hybridization (FISH)
Brugiroux, S., Berry, D., Ring, D., Barnich, N., Daims, H. & Stecher, B., 12 Sept 2022, In: Current protocols. 2, 9, 15 p., e548.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2021
Electrochemical enrichment of marine denitrifying bacteria to enhance nitrate metabolization in seawater
De la Fuente, M. J., De la Iglesia, R., Farias, L., Daims, H., Lukumbuzya, M. & Vargas, I. T., 1 Aug 2021, In: Journal of Environmental Chemical Engineering. 9, 4, 9 p., 105604.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Genomic and kinetic analysis of novel Nitrospinae enriched by cell sorting
Mueller, A. J., Jung, M-Y., Strachan, C., Herbold, C., Kirkegaard, R. H., Wagner, M. & Daims, H., Mar 2021, In: ISME Journal. 15, 3, p. 732-745 14 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrogen Kinetic Isotope Effects of Nitrification by the Complete Ammonia Oxidizer Nitrospira inopinata
Liu, S., Jung, M-Y., Zhang, S., Wagner, M., Daims, H. & Wanek, W., 8 Dec 2021, In: mSphere. 6, 6, 14 p., e0063421.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Sustained nitrogen loss in a symbiotic association of Comammox Nitrospira and Anammox bacteria
Gottshall, E. Y., Bryson, S. J., Cogert, K. I., Landreau, M., Sedlacek, C. J., Stahl, D. A., Daims, H. & Winkler, M., 1 Sept 2021, In: Water Research. 202, 8 p., 117426.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2020
Activity and Metabolic Versatility of Complete Ammonia Oxidizers in Full-Scale Wastewater Treatment Systems
Yang, Y., Daims, H., Liu, Y., Herbold, C. W., Pjevac, P., Lin, J-G., Li, M. & Gu, J-D., 17 Mar 2020, In: mBio. 11, 2, 15 p., e03175-19.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
A refined set of rRNA-targeted oligonucleotide probes for in situ detection and quantification of ammonia-oxidizing bacteria
Lukumbuzya, M., Kristensen, J. M., Kitzinger, K., Pommerening-Röser, A., Nielsen, P. H., Wagner, M., Daims, H. & Pjevac, P., 1 Nov 2020, In: Water Research. 186, 10 p., 116372.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Exploring the upper pH limits of nitrite oxidation: diversity, ecophysiology, and adaptive traits of haloalkalitolerant Nitrospira
Daebeler, A., Kitzinger, K., Koch, H., Herbold, C., Steinfeder, M., Schwarz, J., Zechmeister, T., Karst, S. M., Albertsen, M., Nielsen, P. H., Wagner, M. & Daims, H., Dec 2020, In: ISME Journal. 14, 12, p. 2967-2979 13 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Single cell analyses reveal contrasting life strategies of the two main nitrifiers in the ocean
Kitzinger, K., Marchant, H. K., Bristow, L. A., Herbold, C. W., Padilla, C. C., Kidane, A. T., Littmann, S., Daims, H., Pjevac, P., Stewart, F. J., Wagner, M. & Kuypers, M. M. M., 7 Feb 2020, In: Nature Communications. 11, 1, 12 p., 767.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Transcriptomic Response of Nitrosomonas europaea Transitioned from Ammonia- to Oxygen-Limited Steady-State Growth
Sedlacek, C., Giguere, A., Dobie, M. D., Mellbye, B. L., Ferrell, R. V., Wöbken, D., Sayavedra-Soto, L. A., Bottomley, P. J., Daims, H., Wagner, M. & Pjevac, P., 14 Jan 2020, In: mSystems. 5, 1, 14 p., e00562-19.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2019
A fiber-deprived diet disturbs the fine-scale spatial architecture of the murine colon microbiome
Riva, A., Kuzyk, O., Forsberg, E., Siuzdak, G., Pfann, C., Herbold, C., Daims, H., Loy, A., Warth, B. & Berry, D., 25 Sept 2019, In: Nature Communications. 10, 1, 11 p., 4366.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
A Multicolor Fluorescence in situ Hybridization Approach Using an Extended Set of Fluorophores to Visualize Microorganisms
Lukumbuzya, M., Schmid, M., Pjevac, P. & Daims, H., 19 Jun 2019, In: Frontiers in Microbiology. 10, 13 p., 1383.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
An automated Raman-based platform for the sorting of live cells by functional properties
Lee, K. S., Palatinszky, M., Cardoso Pereira, M. D. F., Nguyen, J., Fernandez, V., Mueller, A. J., Menolascina, F., Daims, H., Berry, D., Wagner, M. & Stocker, R., Jun 2019, In: Nature Microbiology. 4, 6, p. 1035-1048 14 p.Publications: Contribution to journal › Article › Peer Reviewed
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Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata
Kits, K., Jung, M-Y., Vierheilig, J., Pjevac, P., Sedlacek, C. J., Liu, S., Herbold, C., Stein, L. Y., Richter, A., Wissel, H., Brueggemann, N., Wagner, M. & Daims, H., 23 Apr 2019, In: Nature Communications. 10, 1, 12 p., 1836.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2018
Characterization of the First “Candidatus Nitrotoga" Isolate Reveals Metabolic Versatility and Separate Evolution of Widespread Nitrite-Oxidizing Bacteria
Kitzinger, K., Koch, H., Lücker, S., Sedlacek, C. J., Herbold, C., Schwarz, J., Daebeler, A., Mueller, A. J., Lukumbuzya, M., Romano, S., Leisch, N., Karst, S. M., Kirkegaard, R., Albertsen, M., Nielsen, P. H., Wagner, M. & Daims, H., 10 Jul 2018, In: mBio. 9, 4, 16 p., e01186-18.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Cultivation and Genomic Analysis of "Candidatus Nitrosocaldus islandicus," an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland
Daebeler, A., Herbold, C. W., Vierheilig, J., Sedlacek, C. J., Pjevac, P., Albertsen, M., Kirkegaard, R. H., de la Torre, J. R., Daims, H. & Wagner, M., 14 Feb 2018, In: Frontiers in Microbiology. 9, 16 p., 193.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Draft Genome Sequence of Telmatospirillum siberiense 26-4b1, an Acidotolerant Peatland Alphaproteobacterium Potentially Involved in Sulfur Cycling
Hausmann, B., Pjevac, P., Schreck, K., Herbold, C., Daims, H., Wagner, M. & Loy, A., 25 Jan 2018, In: Genome Announcements. 6, 4, 2 p., e01524-17.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Nitrolancea
Sorokin, D. Y., Lücker, S. & Daims, H., 12 Dec 2018, Bergey’s Manual of Systematics of Archaea and Bacteria. Hoboken, NJ: John Wiley & Sons, Inc.Publications: Contribution to book › Chapter
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Nitrospira
Daims, H. & Wagner, M., May 2018, In: Trends in Microbiology. 26, 5, p. 462-463 2 p.Publications: Contribution to journal › Article › Peer Reviewed
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Stickstoffkreisläufe in der Abwasserreinigung - neue und bewährte Wege
Daims, H., 2018, Aktuelle biologische Methoden und Verfahren in der Wassergütewirtschaft: ÖWAV-Seminar - Wien 2018, TU Wien, 27.-28. Februar 2018. Krampe, J. (ed.). Wien: Institut für Wassergüte und Ressourcenmanagement, p. 31-46 16 p. (Wiener Mitteilungen: Wasser - Abwasser - Gewässer, Vol. 247).Publications: Contribution to book › Contribution to proceedings › Peer Reviewed
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The draft genome sequence of "Nitrospira lenta" strain BS10, a nitrite oxidizing bacterium isolated from activated sludge
Sakoula, D., Nowka, B., Spieck, E., Daims, H. & Lücker, S., 22 Nov 2018, In: Standards in Genomic Sciences. 13, 1, p. 32 8 p., 32.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2017
AmoA-Targeted Polymerase Chain Reaction Primers for the Specific Detection and Quantification of Comammox Nitrospira in the Environment
Pjevac, P., Schauberger, C., Poghosyan, L., Herbold, C. W., van Kessel, M. A. H. J., Daebeler, A., Steinberger, M., Jetten, M. S. M., Lücker, S., Wagner, M. & Daims, H., 4 Aug 2017, In: Frontiers in Microbiology. 8, 11 p., 1508.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Crenothrix are major methane consumers in stratified lakes
Oswald, K., Graf, J. S., Littmann, S., Tienken, D., Brand, A., Wehrli, B., Albertsen, M., Daims, H., Wagner, M., Kuypers, M. M., Schubert, C. J. & Milucka, J., Sept 2017, In: The ISME Journal: multidisciplinary journal of microbial ecology. 11, 9, p. 2124-2140 17 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Development of a metabolomics method for the investigation of apparent symbiosis
El Abiead, Y., Pjevac, P., Schwaiger, M., Rampler, E., Daims, H., Wagner, M. & Köllensperger, G., 12 May 2017, Book of Abstracts: 13 th ASAC JunganalytikerInnen - Forum; BOKU Vienna, 12th and 13th of May 2017. Causon, T. (ed.). p. 6Publications: Contribution to book › Contribution to proceedings
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Giant viruses with an expanded complement of translation system components
Schulz, F., Yutin, N., Ivanova, N. N., Ortega, D. R., Lee, T. K., Vierheilig, J., Daims, H., Horn, M., Wagner, M., Jensen, G. J., Kyrpides, N. C., Koonin, E. V. & Woyke, T., 7 Apr 2017, In: Science. 356, 6333, p. 82-85 4 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle
Kits, K. D., Sedlacek, C. J., Lebedeva, E. V., Han, P., Bulaev, A., Pjevac, P., Daebeler, A., Romano, S., Albertsen, M., Stein, L. Y., Daims, H. & Wagner, M., 14 Sept 2017, In: Nature. 549, 7671, p. 269-272 4 p.Publications: Contribution to journal › Article › Peer Reviewed
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2016
A New Perspective on Microbes Formerly Known as Nitrite-Oxidizing Bacteria
Daims, H., Lücker, S. & Wagner, M., Sept 2016, In: Trends in Microbiology. 24, 9, p. 699-712 14 p.Publications: Contribution to journal › Review › Peer Reviewed
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Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrification
Hemp, J., Lücker, S., Schott, J., Pace, L. A., Johnson, J. E., Schink, B., Daims, H. & Fischer, W. W., Nov 2016, In: The ISME Journal: multidisciplinary journal of microbial ecology. 10, 11, p. 2669-2678 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Relative Abundance of Nitrotoga spp. in a Biofilter of a Cold-Freshwater Aquaculture Plant Appears To Be Stimulated by Slightly Acidic pH
Hupeden, J., Wegen, S., Off, S., Luecker, S., Bedarf, Y., Daims, H., Kuehn, C. & Spieck, E., Mar 2016, In: Applied and Environmental Microbiology. 82, 6, p. 1838-1845 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2015
Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation
Nowka, B., Daims, H. & Spieck, E., Jan 2015, In: Applied and Environmental Microbiology. 81, 2, p. 745-753 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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Complete nitrification by Nitrospira bacteria
Daims, H., Lebedeva, E. V., Pjevac, P., Han, P., Herbold, C., Albertsen, M., Jehmlich, N., Palatinszky, M., Vierheilig, J., Bulaev, A., Kirkegaard, R. H., Bergen, M. V., Rattei, T., Bendinger, B., Nielsen, P. H. & Wagner, M., 24 Dec 2015, In: Nature. 528, 7583, p. 504–509 6 p.Publications: Contribution to journal › Article › Peer Reviewed
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Cyanate as an energy source for nitrifiers
Palatinszky, M., Herbold, C., Jehmlich, N., Pogoda, M., Han, P., von Bergen, M., Lagkouvardos, I., Karst, S. M., Galushko, A., Koch, H., Berry, D., Daims, H. & Wagner, M., 6 Aug 2015, In: Nature. 524, 7563, p. 105–108 4 p.Publications: Contribution to journal › Short communication › Peer Reviewed
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Dimeric chlorite dismutase from the nitrogen-fixing cyanobacterium Cyanothece sp PCC7425
Schaffner, I., Hofbauer, S., Krutzler, M., Pirker, K. F., Bellei, M., Stadlmayr, G., Mlynek, G., Djinovic-Carugo, K., Battistuzzi, G., Furtmueller, P. G., Daims, H. & Obinger, C., Jun 2015, In: Molecular Microbiology. 96, 5, p. 1053-1068 16 p.Publications: Contribution to journal › Article › Peer Reviewed
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Expanded metabolic versatility of ubiquitous nitrite-oxidizing bacteria from the genus Nitrospira
Koch, H., Lücker, S., Albertsen, M., Kitzinger, K., Herbold, C., Spieck, E., Nielsen, P. H., Wagner, M. & Daims, H., 8 Sept 2015, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112, 36, p. 11371-11376 6 p.Publications: Contribution to journal › Article › Peer Reviewed
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Functionally relevant diversity of closely related Nitrospira in activated sludge
Gruber-Dorninger, C., Pester, M., Kitzinger, K., Savio, D. F., Loy, A., Rattei, T., Wagner, M. & Daims, H., 1 Mar 2015, In: The ISME Journal: multidisciplinary journal of microbial ecology. 9, p. 643-655Publications: Contribution to journal › Article › Peer Reviewed
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Improved isolation strategies allowed the phenotypic differentiation of two Nitrospira strains from widespread phylogenetic lineages
Nowka, B., Off, S., Daims, H. & Spieck, E., Mar 2015, In: FEMS microbiology ecology. 91, 3, 11 p., fiu031.Publications: Contribution to journal › Article › Peer Reviewed
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Nitrotoga-like bacteria are previously unrecognized key nitrite oxidizers in full-scale wastewater treatment plants
Luecker, S., Schwarz, J., Gruber-Dorninger, C., Spieck, E., Wagner, M. & Daims, H., Mar 2015, In: The ISME Journal: multidisciplinary journal of microbial ecology. 9, 3, p. 708-720 13 p.Publications: Contribution to journal › Article › Peer Reviewed