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  • 2025

    Intra-individual variability in ancient plasmodium DNA recovery highlights need for enhanced sampling

    Llanos-Lizcano, A., Hämmerle, M., Sperduti, A., Sawyer, S., Zagorc, B., Özdoğan, K. T., Guellil, M., Cheronet, O., Kuhlwilm, M., Pinhasi, R. & Gelabert, P., 4 Jan 2025, In: Scientific Reports. 15, 1, 757.

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  • 2024

    Deep genetic substructure within bonobos

    Han, S., Filippo, C. D., Parra, G., Meneu, J. R., Laurent, R., Frandsen, P., Hvilsom, C., Gronau, I., Marques-Bonet, T., Kuhlwilm, M. & Andrés, A. M., 18 Nov 2024, In: Current Biology. 34, 22, p. 5341-5348.e3

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  • Identification of constrained sequence elements across 239 primate genomes

    Kuderna, L. F. K., Ulirsch, J. C., Rashid, S., Ameen, M., Sundaram, L., Hickey, G., Cox, A. J., Gao, H., Kumar, A., Aguet, F., Christmas, M. J., Clawson, H., Haeussler, M., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., & 72 othersRouselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., de Vries, D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., Horvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., de Melo, F. R., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., da Silva, M. N. F., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., Zhang, G., Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Karakikes, I., Wang, K. C., Umapathy, G., Roos, C., Boubli, J. P., Siepel, A., Kundaje, A., Paten, B., Lindblad-Toh, K., Rogers, J., Marques Bonet, T. & Farh, K. K-H., 25 Jan 2024, In: Nature. 625, 7996, p. 735-742 8 p.

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  • Link between Monkeypox Virus Genomes from Museum Specimens and 1965 Zoo Outbreak

    Hämmerle, M., Rymbekova, A., Gelabert, P., Sawyer, S., Cheronet, O., Bernardi, P., Calvignac-Spencer, S., Kuhlwilm, M., Guellil, M. & Pinhasi, R., Apr 2024, In: Emerging infectious diseases. 30, 4, p. 815-817 3 p.

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  • Screening great ape museum specimens for DNA viruses

    Hämmerle, M., Guellil, M., Trgovec-Greif, L., Cheronet, O., Sawyer, S., Ruiz-Gartzia, I., Lizano, E., Rymbekova, A., Gelabert, P., Bernardi, P., Han, S., Rattei, T., Schuenemann, V. J., Marques-Bonet, T., Guschanski, K., Calvignac-Spencer, S., Pinhasi, R. & Kuhlwilm, M., 30 Nov 2024, In: Scientific Reports. 14, 1, 29806.

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  • Social and genetic diversity in first farmers of central Europe

    PERE, GELABERT., Bickle, P. F., Hofmann, D., Teschler-Nicola, M. E., Anders, A., Huang, X., Hämmerle, M., Olalde, I., Fournier, R., Ringbauer, H., Akbari, A., Cheronet, O., Lazaridis, I., Broomandkhoshbacht, N., Fernandes, D. M., Buttinger, K., Callan, K., Candilio, F., Morante, G. B., Curtis, E., & 71 othersFerry, M., Keating, D., Freilich, S., Kearns, A., Harney, É., Lawson, A. M., Mandl, K., Michel, M., Oberreiter, V., Zagorc, B., Oppenheimer, J., Sawyer, S., Schattke, C., Özdoğan, K. T., Qiu, L., Workman, J. N., Zalzala, F., Mallick, S., Mah, M., Micco, A., Pieler, F., Pavuk, J., Šefčáková, A., Lazar, C., Starović, A., Djuric, M., Škrivanko, M. K., Slaus, M., Bedić, Ž., Novotny, F., Szabó, L. D., Cserpák-Laczi, O., Hága, T., Szolnoki, L., Hajdú, Z., Mirea, P., Nagy, E. G., Virág, Z. M., Attila, H. M., Horváth, L. A., Biró, K. T., Domboróczki, L., Szeniczey, T., Jakucs, J., Szelekovszky, M., Farkas, Z., Sztáncsuj, S. J., Tóth, K., Csengeri, P., Pap, I., Patay, R., Putica, A., Vasov, B., Havasi, B., Sebők, K., Raczky, P., Lovász, G., Tvrdy, Z., Rohland, N., Novak, M., Ruttkay, M., Krošláková, M., Batora, J., Paluch, T., Borić, D., Dani, J., Kuhlwilm, M., Palamara, P. F., Hajdu, T., Pinhasi, R. & Reich, D., 29 Nov 2024, In: Nature Human Behaviour.

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  • 2023

    A global catalog of whole-genome diversity from 233 primate species

    Kuderna, L. F. K., Gao, H., Janiak, M. C., Kuhlwilm, M., Orkin, J. D., Bataillon, T., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, F. E., Agueda, L., Blanc, J., Gut, M., Vries, D. D., Goodhead, I., Harris, R. A., Raveendran, M., Jensen, A., Chuma, I. S., & 55 othersHorvath, J. E., Hvilsom, C., Juan, D., Frandsen, P., Schraiber, J. G., Melo, F. R. D., Bertuol, F., Byrne, H., Sampaio, I., Farias, I., Valsecchi, J., Messias, M., Silva, M. N. F. D., Trivedi, M., Rossi, R., Hrbek, T., Andriaholinirina, N., Rabarivola, C. J., Zaramody, A., Jolly, C. J., Phillips-Conroy, J., Wilkerson, G., Abee, C., Simmons, J. H., Fernandez-Duque, E., Kanthaswamy, S., Shiferaw, F., Wu, D., Zhou, L., Shao, Y., Zhang, G., Keyyu, J. D., Knauf, S., Le, M. D., Lizano, E., Merker, S., Navarro, A., Nadler, T., Khor, C. C., Lee, J., Tan, P., Lim, W. K., Kitchener, A. C., Zinner, D., Gut, I., Melin, A. D., Guschanski, K., Schierup, M. H., Beck, R. M. D., Umapathy, G., Roos, C., Boubli, J. P., Rogers, J., Farh, K. K-H. & Bonet, T. M., 2 Jun 2023, In: Science. 380, 6648, p. 906-913 8 p.

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  • Divergent sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

    Bentley, B. P., Carrasco-Valenzuela, T., Ramos, E. K. D. S., Pawar, H., Arantes, L. S., Alexander, A., Banerjee, S., Masterson, P., Kuhlwilm, M., Pippel, M., Mountcastle, J., Haase, B., Uliano-Silva, M., Formenti, G., Howe, K., Chow, W., Tracey, A., Sims, Y., Pelan, S., Wood, J., & 27 othersYetsko, K., Perrault, J., Stewart, K., Benson, S. R., Levy, Y., Todd, E., Shaffer, H. B., Scott, P., Henen, B., Murphy, R. W., Mohr, D., Scott, A. F., Duffy, D., Gemmell, N. J., Suh, A., Winkler, S., Thibaud-Nissen, F., Nery, M. F., Marques-Bonet, T., Antunes, A., Tikochinski, Y., Dutton, P. H., Fedrigo, O., Myers, E., Jarvis, E., Mazzoni, C. & Komoroske, L. M., 14 Feb 2023, In: Proceedings of the National Academy of Sciences. 120, 7, e2201076120.

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  • Genome-wide coancestry reveals details of ancient and recent male-driven reticulation in baboons

    Sørensen, E. F., Harris, R. A., Zhang, L., Raveendran, M., Kuderna, L. F. K., Walker, J. A., Storer, J. M., Kuhlwilm, M., Fontsere, C., Seshadri, L., Bergey, C. M., Burrell, A. S., Bergman, J., Phillips-Conroy, J. E., Shiferaw, F., Chiou, K. L., Chuma, I. S., Keyyu, J. D., Fischer, J., Gingras, M-C., & 12 othersSalvi, S., Doddapaneni, H., Schierup, M. H., Batzer, M. A., Jolly, C. J., Knauf, S., Zinner, D., Farh, K. K-H., Marques-Bonet, T., Munch, K., Roos, C. & Rogers, J., 2 Jun 2023, In: Science. 380, 6648, eabn8153.

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  • Ghost admixture in eastern gorillas

    Pawar, H., Rymbekova, A., Cuadros-Espinoza, S., Huang, X., Manuel, M. D., Valk, T. V. D., Lobon, I., Alvarez-Estape, M., Haber, M., Dolgova, O., Han, S., Esteller-Cucala, P., Juan, D., Ayub, Q., Garcia, R. B., Kelley, J., Cornejo, O. E., Lao, O., Andrés, A. M., Guschanski, K., & 7 othersSsebide, B., Cranfield, M., Tyler-Smith, C., Xue, Y., Prado-Martinez, J., Marques-Bonet, T. & Kuhlwilm, M., 27 Jul 2023, In: Nature Ecology & Evolution. 7, 9, p. 1503-1514 12 p.

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  • The landscape of tolerated genetic variation in humans and primates

    Gao, H., Hamp, T., Ede, J., Schraiber, J. G., McRae, J., Singer-Berk, M., Yang, Y., Dietrich, A. S. D., Fiziev, P., Kuderna, L. F. K., Sundaram, L., Wu, Y., Adhikari, A. N., Field, Y., Batzoglou, S., Aguet, F., Lemire, G., Reimers, R., Balick, D., Janiak, M., & 30 othersKuhlwilm, M., Orkin, J., Manu, S., Valenzuela, A., Bergman, J., Rousselle, M., Silva, FE., Calpena, L. A., Blanc, J., Gut, M., Vries, D. D., Goodhead, I., Harris, R., Raveendran, M., Jensen, A., Chuma, I., Horvath, J., Hvilsom, C., Juan, D., Frandsen, P., Melo, F. R. D., Bertuol, F., Byrne, H., Sampaio, I., Farias, I. P., Valsecchi, J., Messias, M., Silva, M. N. F. D., Trivedi, M. & Rossi, R. V., 2 Jun 2023, In: Science. 380, 6648, eabn8197.

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  • 2022

    Population dynamics and genetic connectivity in recent chimpanzee history

    Fontsere, C., Kuhlwilm, M., Morcillo-Suarez, C., Alvarez-Estape, M., Lester, J. D., Gratton, P., Schmidt, J. M., Dieguez, P., Aebischer, T., Álvarez-Varona, P., Agbor, A., Angedakin, S., Assumang, A. K., Ayimisin, E. A., Bailey, E., Barubiyo, D., Bessone, M., Carretero-Alonso, A., Chancellor, R., Cohen, H., & 68 othersDanquah, E., Deschner, T., Dunn, A., Dupain, J., Egbe, V. E., Feliu, O., Goedmakers, A., Granjon, A-C., Head, J., Hedwig, D., Hermans, V., Hernandez-Aguilar, R. A., Imong, I., Jones, S., Junker, J., Kadam, P., Kaiser, M., Kambere, M., Kambale, M. V., Kalan, A. K., Kienast, I., Kujirakwinja, D., Langergraber, K., Lapuente, J., Larson, B., Laudisoit, A., Lee, K., Llana, M., Llorente, M., Marrocoli, S., Morgan, D., Mulindahabi, F., Murai, M., Neil, E., Nicholl, S., Nixon, S., Normand, E., Orbell, C., Ormsby, L. J., Pacheco, L., Piel, A., Riera, L., Robbins, M. M., Rundus, A., Sanz, C., Sciaky, L., Sommer, V., Stewart, F. A., Tagg, N., Tédonzong, L. R., Ton, E., van Schijndel, J., Vergnes, V., Wessling, E. G., Willie, J., Wittig, R. M., Yuh, Y. G., Yurkiw, K., Zuberbuehler, K., Hecht, J., Vigilant, L., Boesch, C., Andrés, A. M., Hughes, D. A., Kühl, H. S., Lizano, E., Arandjelovic, M. & Marques-Bonet, T., 8 Jun 2022, In: Cell Genomics. 2, 6, 39 p., 100133.

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  • sstar: A Python package for detecting archaic introgression from population genetic data with S*

    Huang, X., Kruisz, P. & Kuhlwilm, M., Nov 2022, In: Molecular Biology and Evolution. 39, 11, msac212.

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  • Temporal mapping of derived high-frequency gene variants supports the mosaic nature of the evolution of Homo sapiens

    Andirkó, A., Moriano, J., Vitriolo, A., Kuhlwilm, M., Testa, G. & Boeckx, C., 15 Jun 2022, In: Scientific Reports. 12, 1, 9937.

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  • 2021

    The genetic impact of an Ebola outbreak on a wild gorilla population

    Kuhlwilm, M., Fontsere, C., Frandsen, P., Hernandez-Rodriguez, J., Niemann, J., Scharff-Olsen, C. H., Vallet, D., Le Gouar, P., Ménard, N., Navarro, A., Siegismund, H. R., Hvilsom, C., Gilbert, M. T. P., Hughes, D. & Marquès-Bonet, T., 2021, In: BMC Genomics. 22, 1, 12 p., 735.

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