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Publications per year
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2014
From proteomics to systems biology: MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform
Weckwerth, W., Wienkoop, S., Hoehenwarter, W., Egelhofer, V. & Sun, X., 2014, In: Methods in Molecular Biology. 1072, p. 15-27 13 p.Publications: Contribution to journal › Article › Peer Reviewed
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Isolation of cellular membranes from lignin-producing tissues of Norway spruce and analysis of redox enzymes
Kärkönen, A., Meisrimler, C-N., Takahashi, J., Väisänen, E., Laitinen, T., Jiménez Barboza, L. A., Holmström, S., Salonvaara, S., Wienkoop, S., Fagerstedt, K. V. & Lüthje, S., 1 Dec 2014, In: Physiologia Plantarum. 152, 4, p. 599-616 18 p.Publications: Contribution to journal › Article › Peer Reviewed
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Mass Western for absolute quantification of target proteins and considerations about the instrument of choice.
Lyon, D., Weckwerth, W. & Wienkoop, S., 2014, Plant Proteomics : Methods in Molecular Biology. Humana Press, Inc., Vol. 1072. p. 199-208 10 p. (Methods in Molecular Biology, Vol. 1072).Publications: Contribution to book › Chapter
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Medicago truncatula proteomics for systems biology: Novel rapid shotgun LC-MS approach for relative quantification based on full-scan selective peptide extraction (Selpex)
Castillejo, M. A., Staudinger, C., Egelhofer, V. & Wienkoop, S., 2014, Plant Proteomics: Methods and Protocols. Humana Press, Inc., Vol. 1072. p. 303-313 11 p. (Methods in Molecular Biology, Vol. 1072).Publications: Contribution to book › Chapter › Peer Reviewed
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System Level Network Analysis of Nitrogen Starvation and Recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation
Valledor, L., Furuhashi, T., Recuenco-Munoz, L., Wienkoop, S. & Weckwerth, W., 2014, In: Biotechnology for Biofuels. 7, 1, p. 171 171.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2013
INPPO Actions and Recognition as a Driving Force for Progress in Plant Proteomics: Change of Guard, INPPO Update, and Upcoming Activities
Agrawal, G. K., Job, D., Kieselbach, T., Barkla, B. J., Chen, S., Deswal, R., Luethje, S., Amalraj, R. S., Tanou, G., Ndimba, B. K., Cramer, R., Weckwerth, W., Wienkoop, S., Dunn, M. J., Kim, S. T., Fukao, Y., Yonekura, M., Zolla, L., Rohila, J. S., Waditee-Sirisattha, R., & 6 others, Nov 2013, In: Proteomics. 13, 21, p. 3093-3100 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Local inhibition of nitrogen fixation and nodule metabolism in drought-stressed soybean
Gil-Quintana, E., Larrainzar, E., Seminario, A., Díaz-Leal, J. L., Alamillo, J. M., Pineda, M., Arrese-Igor, C., Wienkoop, S. & González, E. M., 11 Apr 2013, In: Journal of Experimental Botany. 64, 8, p. 2171-2182 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Medicago truncatula root and shoot Metabolomics: Protocol for the investigation of the primary carbon and nitrogen metabolism based on GC-MS
Mehmeti, V., Fragner, L. & Wienkoop, S., 2013, The Handbook of Plant Metabolomics: Metabolite Profiling and Networking. Wiley - V C H, p. 111-123 6Publications: Contribution to book › Chapter
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Mitochondria are an early target of oxidative modifications in senescing legume nodules
Metamoros, M. A., Fernández-García, N., Wienkoop, S., Loscos, J., Saiz, A. & Becana, M., 2013, In: New Phytologist. 197, 3, p. 873-885 13 p.Publications: Contribution to journal › Article › Peer Reviewed
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Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform
Mari, A., Lyon, D., Fragner, L., Montoro, P., Piacente, S., Wienkoop, S., Egelhofer, V. & Weckwerth, W., Jun 2013, In: Metabolomics. 9, 3, p. 599-607 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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Plant Systems Biology
Staudinger, C. & Wienkoop, S., 2013, Encyclopedia of Systems Biology. Springer New York LLC, p. 1716-1717Publications: Contribution to book › Chapter
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Proteomics, Quantification-Unbiased and Target Approach
Staudinger, C. & Wienkoop, S., 2013, Encyclopedia of Systems Biology. Springer New York LLC, p. 1799-1800Publications: Contribution to book › Entry for reference work
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Selective Reaction Monitoring
Wienkoop, S., 2013, Encyclopedia of Systems Biology. Springer New York LLC, p. 191Publications: Contribution to book › Entry for reference work
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The plasma membrane proteome of maize roots grown under low and high iron conditions
Hopff, D., Wienkoop, S. & Lüthje, S., 8 Oct 2013, In: Journal of Proteomics. 91, p. 605-618 14 p.Publications: Contribution to journal › Article › Peer Reviewed
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Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments
Egelhofer, V., Hoehenwarter, W., Lyon, D., Weckwerth, W. & Wienkoop, S., 28 Feb 2013, In: Nature Protocols. 8, 3, p. 595-601 7 p.Publications: Contribution to journal › Article › Peer Reviewed
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2012
Boosting the Globalization of Plant Proteomics through INPPO: Current Developments and Future Prospects
Agrawal, G. K., Sarkar, A., Agrawal, R., Wienkoop, S. & Weckwerth, W., 2012, In: Proteomics. 12, 3, p. 359-368 10 p.Publications: Contribution to journal › Article › Peer Reviewed
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Neurotoxin localization to ectodermal gland cells uncovers an alternative mechanism of venom delivery in sea anemones
Moran, Y., Genikhovich, G., Gordon, D., Wienkoop, S., Zenkert, C., Özbek, S., Technau, U. & Gurevitz, M., 2012, In: Proceedings of the Royal Society of London B: Biological Sciences. 279, 1732, p. 1351-1358 8 p.Publications: Contribution to journal › Article › Peer Reviewed
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Oxidative stress is a consequence, not a cause, of aluminum toxicity in the forage legume Lotus corniculatus
Navascues, J., Perez-Rontome, C., Sanchez, D. H., Staudinger, C., Wienkoop, S., Rellan-Alvarez, R. & Becana, M., 2012, In: New Phytologist. 193, 3, p. 625-636 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Possible role of nutritional priming for early salt and drought stress responses in Medicago truncatula.
Staudinger, C., Mehmeti-Tershani, V., Lyon, D., Egelhofer, V. & Wienkoop, S., 2012, In: Frontiers in Plant Science. 3, 285Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
ProMEX - a mass spectral reference database for plant proteomics
Wienkoop, S., Staudinger, C., Höhenwarter, W., Weckwerth, W. & Egelhofer, V., 2012, In: Frontiers in Plant Science. 3, 125Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
The different proteomes of Chlamydomonas reinhardtii
Valledor, L., Recuenco-Munoz, L., Egelhofer, V., Wienkoop, S. & Weckwerth, W., 2012, In: Journal of Proteomics. 75, 18, p. 5883-5887 5 p.Publications: Contribution to journal › Article › Peer Reviewed
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2011
AN OPTIMIZED METHOD FOR THE ISOLATION OF NUCLEI FROM CHLAMYDOMONAS REINHARDTII (CHLOROPHYCEAE)
Winck, F. V., Kwasniewski, M., Wienkoop, S. & Müller-Röber, B., 2011, In: Journal of Phycology: an international journal of algal research. 47, 2, p. 333-340 8 p.Publications: Contribution to journal › Article › Peer Reviewed
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Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics
Höhenwarter, W., Chen, Y., Recuenco-Munoz, L., Wienkoop, S. & Weckwerth, W., 2011, In: Amino Acids. 41, 2, p. 329-341 13 p.Publications: Contribution to journal › Article › Peer Reviewed
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MAPA Distinguishes Genotype-Specific Variability of Highly Similar Regulatory Protein Isoforms in Potato Tuber
Höhenwarter, W., Larhlimi, A., Hummel, J., Egelhofer, V., Selbig, J., van Dongen, J. T., Wienkoop, S. & Weckwerth, W., 2011, In: Journal of Proteome Research. 10, 7, p. 2979-2991 13 p.Publications: Contribution to journal › Article › Peer Reviewed
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MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data
Joshi, H. J., Hirsch-Hoffmann, M., Bärenfaller, K., Gruissem, W., Baginsky, S., Schmidt, R., Schulze, W. X., Sun, Q., van Wijk, K., Egelhofer, V., Wienkoop, S., Weckwerth, W. & Heazlewood, J. L., 2011, In: Plant Physiology. 155, p. 259-270 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Proteomics and metabolomics for systems biology in Legumes
Wienkoop, S., 2011, Genetics, Genomics and Breeding of Cool Season Grain Legumes. Vega, M. P. D. L., Torres, A. M. & Cubero, J. I. (eds.). Unknown publisherPublications: Contribution to book › Chapter
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2010
A proteomics toolbox
Wienkoop, S. & Weckwerth, W., 2010, In: Analytica PRO – Das offizielle Messe-Magazin. 1, 2010, p. 22-25 4 p.Publications: Contribution to journal › Article › Peer Reviewed
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Arabidopsis thaliana as a model organism for plant proteome research
Wienkoop, S., Baginsky, S. & Weckwerth, W., 2010, In: Journal of Proteomics. 73, 11, p. 2239-2248 10 p.Publications: Contribution to journal › Article › Peer Reviewed
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Spectral counting robust on high mass accuracy mass spectrometers
Höhenwarter, W. & Wienkoop, S., 2010, In: Rapid Communications in Mass Spectrometry. 24, 24, p. 3609-3614 6 p.Publications: Contribution to journal › Article › Peer Reviewed
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Targeted Proteomics for Chlamydomonas reinhardtii combines mass western, subcellular protein fractionation, metabolomics and metabolic flux analysis
Wienkoop, S., Weiß, J., May, P., Kempa, S., Irgang, S., Recuenco-Munoz, L., Pietzke, M., Schwemmer, T., Rupprecht, J., Egelhofer, V. & Weckwerth, W., 2010, In: Molecular BioSystems. 6, p. 1018-1031 14 p.Publications: Contribution to journal › Article › Peer Reviewed
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2009
An automated GCxGC-TOF-MS protocol for batch-wise extraction and alignment of mass isotopomer matrixes from differential 13C-labelling experiments: a case study for photoautotrophic-mixotrophic grown Chlamydomonas reinhardtii cells
Kempa, S., Hummel, J., Schwemmer, T., Pietzke, M., Strehmel, N., Wienkoop, S., Kopka, J. & Weckwerth, W., 2009, In: Journal of Basic Microbiology: an international journal on biochemistry, physiology, genetics, morphology and ecology of microorganisms. 49, 1, p. 82-91 10 p.Publications: Contribution to journal › Article › Peer Reviewed
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Carbon Metabolism and Bacteroid Functioning Are Involved in the Regulation of Nitrogen Fixation in Medicago truncatula Under Drought and Recovery
Larrainzar, E., Wienkoop, S., Scherling, C., Kempa, S., Ladrera, R., Arrese-Igor, C., Weckwerth, W. & Gonzalez, E. M., 2009, In: Molecular Plant - Microbe Interactions. 22, 12, p. 1565-1576 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Evidence for novel tomato seed allergens: Ige-reactive legumin and vicilin proteins identified by multidimensional protein fractionation-mass spectrometry and in silico epitope modeling
Bässler, O. Y., Weiss, J., Wienkoop, S., Lehmann, K., Scheler, C., Dölle, S., Schwarz, D., Franken, P., George, E., Worm, M. & Weckwerth, W., 2009, In: Journal of Proteome Research. 8, 3, p. 1111-1122 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Proteomics in Genomannotation und Systembiologie
Wienkoop, S. & Weckwerth, W., 2009, In: BioSpektrum. 2009, 2, p. 148-151 4 p.Publications: Contribution to journal › Article › Peer Reviewed
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2008
Absolute quantification of Medicago truncatula sucrose synthase isoforms and N-metabolism enzymes in symbiotic root nodules and the detection of novel nodule phosphoproteins by mass spectrometry
Wienkoop, S., Larrainzar, E., Glinski, M., Gonzalez, E. M., Arrese-Igor, C. & Weckwerth, W., 2008, In: Journal of Experimental Botany. 59, 12, p. 3307-3315 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis
Wienkoop, S., Weckwerth, W., Timm, S., Nunes-Nesi, A., Pärnik, T., Bauwe, H., Keerberg, O., Kleczkowski, L. A., Fernie, A. R. & Morgenthal, K., 2008, In: The Plant Cell. 20, 10, p. 2848-2859 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment
Höhenwarter, W., van Dongen, J. T., Wienkoop, S., Steinfath, M., Hummel, J., Erban, A., Sulpice, R., Regierer, B., Kopka, J., Geigenberger, P. & Weckwerth, W., 2008, In: Proteomics. 8, p. 4214-4225 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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If the antibody fails -- a mass Western approach
Lehmann, U., Wienkoop, S., Tschoep, H. & Weckwerth, W., 2008, In: The Plant Journal. 55, 6, p. 1039-1046 8 p.Publications: Contribution to journal › Article › Peer Reviewed
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Integration of metabolomic and proteomic phenotypes: analysis of data covariance dissects starch and RFO metabolism from low and high temperature compensation response in Arabidopsis thaliana
Wienkoop, S., Morgenthal, K., Wolschin, F., Scholz, M., Selbig, J. & Weckwerth, W., 2008, In: Molecular and Cellular Proteomics. 7, p. 1725-1736 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Metabolomics- and proteomics-assisted genome annotation and analysis of the draft metabolic network of Chlamydomonas reinhardtii
May, P., Wienkoop, S., Kempa, S., Usadel, B., Christian, N., Rupprecht, J., Weiss, J., Recuenco-Munoz, L., Ebenhöh, O., Weckwerth, W. & Walther, D., 2008, In: Genetics: a periodical record of investigations bearing on heredity and variation. 179, p. 157-166 10 p.Publications: Contribution to journal › Article › Peer Reviewed