Publications per year
Publications per year
- 40 results
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2024
Automated image acquisition and analysis of graphene and hexagonal boron nitride from pristine to highly defective and amorphous structures
Propst, D., Joudi, W., Längle, M., Madsen, J., Kofler, C., Mayer, B. M., Lamprecht, D., Mangler, C., Filipovic, L., Susi, T. & Kotakoski, J., 6 Nov 2024, In: Scientific Reports. 14, 1, 10 p., 26939.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
GPAW: An open Python package for electronic structure calculations
Mortensen, J. J., Larsen, A. H., Kuisma, M., Ivanov, A. V., Taghizadeh, A., Peterson, A., Haldar, A., Dohn, A. O., Schäfer, C., Jónsson, E. Ö., Hermes, E. D., Nilsson, F. A., Kastlunger, G., Levi, G., Jónsson, H., Häkkinen, H., Fojt, J., Kangsabanik, J., Sødequist, J., Lehtomäki, J., & 27 others, 7 Mar 2024, In: Journal of Chemical Physics. 160, 9, 41 p., 092503.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Single atoms and metal nanoclusters anchored to graphene vacancies
Trentino, A., Zagler, G., Längle, M., Madsen, J., Susi, T., Mangler, C., Åhlgren, E. H., Mustonen, K. & Kotakoski, J., Sept 2024, In: Micron. 184, 7 p., 103667.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2023
Combined electronic excitation and knock-on damage in monolayer MoS2
Speckmann, C., Lang, J., Madsen, J., Ahmadpour Monazam, M. R., Zagler, G., Leuthner, G. T., McEvoy, N., Mangler, C., Susi, T. & Kotakoski, J., 1 Mar 2023, In: Physical Review B. 107, 9, 7 p., 094112.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Computationally Efficient Handling of Partially Coherent Electron Sources in (S)TEM Image Simulations via Matrix Diagonalization
Li, Z., Rose, H., Madsen, J., Biskupek, J., Susi, T. & Kaiser, U., Feb 2023, In: Microscopy and Microanalysis. 29, 1, p. 364–373 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Creation of Single Vacancies in hBN with Electron Irradiation
Bui, T. A., Leuthner, G. T., Madsen, J., Monazam, M. R. A., Chirita, A. I., Postl, A., Mangler, C., Kotakoski, J. & Susi, T., 27 Sept 2023, In: Small. 19, 39, 9 p., 2301926 .Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Deep reinforcement learning for data-driven adaptive scanning in ptychography
Schloz, M., Müller, J., Pekin, T. C., Van den Broek, W., Madsen, J., Susi, T. & Koch, C. T., 30 May 2023, In: Scientific Reports. 13, 1, 10 p., 8732.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Linear indium atom chains at graphene edges
Elibol, K., Susi, T., Mangler, C., Eder, D., Meyer, J. C., Kotakoski, J., Hobbs, R. G., van Aken, P. A. & Bayer, B. C., 25 Jan 2023, In: npj 2D Materials and Applications. 7, 1, 8 p., 2.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2022
Accurate Computational Prediction of Core-Electron Binding Energies in Carbon-Based Materials: A Machine-Learning Model Combining Density-Functional Theory and GW
Golze, D., Hirvensalo, M., Hernandez-Leon, P., Aarva, A., Etula, J., Susi, T., Rinke, P., Laurila, T. & Caro, M. A., 26 Jul 2022, In: Chemistry of Materials. 34, 14, p. 6240-6254 15 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Beam-driven dynamics of aluminium dopants in graphene
Zagler, G., Stecher, M., Trentino, A., Kraft, F., Su, C., Postl, A., Längle, M., Pesenhofer, C., Mangler, C., Ahlgren, E. H., Markevich, A., Zettl, A., Kotakoski, J., Susi, T. & Mustonen, K., 1 Jul 2022, In: 2D Materials. 9, 3, 9 p., 035009.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Deep learning for electron and scanning probe microscopy: From materials design to atomic fabrication
Kalinin, S., Ziatdinov, M., Spurgeon, S. R., Ophus, C., Stach, E. A., Susi, T., Agar, J. & Randall, J., Sept 2022, In: MRS Bulletin. 47, 9, p. 931-939 9 p.Publications: Contribution to journal › Article › Peer Reviewed
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Graphene Lattices with Embedded Transition-Metal Atoms and Tunable Magnetic Anisotropy Energy: Implications for Spintronic Devices
Langer, R., Mustonen, K., Markevich, A., Otyepka, M., Susi, T. & Blonski, P., 28 Jan 2022, In: ACS Applied Nano Materials. 5, 1, p. 1562–1573 12 p.Publications: Contribution to journal › Article › Peer Reviewed
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Identifying and manipulating single atoms with scanning transmission electron microscopy
Susi, T., 14 Nov 2022, In: Chemical Communications. 58, 88, p. 12274-12285 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Indirect measurement of the carbon adatom migration barrier on graphene
Postl, A., Hilgert, P. P. P., Markevich, A., Madsen, J., Mustonen, K., Kotakoski, J. & Susi, T., 30 Aug 2022, In: Carbon. 196, p. 596-601 6 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Ion-Induced Surface Charge Dynamics in Freestanding Monolayers of Graphene and MoS2 Probed by the Emission of Electrons
Niggas, A., Schwestka, J., Balzer, K., Weichselbaum, D., Schlünzen, N., Heller, R., Creutzburg, S., Inani, H., Tripathi, M., Speckmann, C., McEvoy, N., Susi, T., Kotakoski, J., Gan, Z., George, A., Turchanin, A., Bonitz, M., Aumayr, F. & Wilhelm, R. A., 19 Aug 2022, In: Physical Review Letters. 129, 8, 9 p., 086802.Publications: Contribution to journal › Article › Peer Reviewed
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Three-dimensional ab initio description of vibration-assisted electron knock-on displacements in graphene
Chirita, A., Markevich, A., Tripathi, M., Pike, N. A., Verstraete, M. J., Kotakoski, J. & Susi, T., 13 Jun 2022, In: Physical Review B. 105, 23, 6 p., 235419.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Toward Exotic Layered Materials: 2D Cuprous Iodide
Mustonen, K., Hofer, C., Kotrusz, P., Markevich, A., Hulman, M., Mangler, C., Susi, T., Pennycook, T. J., Hricovini, K., Richter, C., Meyer, J. C., Kotakoski, J. & Skakalova, V., 3 Mar 2022, In: Advanced Materials. 34, 9, 9 p., 2106922.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Two-step implantation of gold into graphene
Trentino, A., Mizohata, K., Zagler, G., Längle, M., Mustonen, K., Susi, T., Kotakoski, J. & Åhlgren, E. H., Apr 2022, In: 2D Materials. 9, 2, 7 p., 025011.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2021
ab initio description of bonding for transmission electron microscopy
Madsen, J., Pennycook, T. J. & Susi, T., Dec 2021, In: Ultramicroscopy. 231, 11 p., 113253.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Atomic-Level Structural Engineering of Graphene on a Mesoscopic Scale
Trentino, A., Madsen, J., Mittelberger, A., Mangler, C., Susi, T., Mustonen, K. & Kotakoski, J., 23 Jun 2021, In: Nano Letters. 21, 12, p. 5179-5185 7 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Catalytic graphitization of single-crystal diamond
Tulić, S., Waitz, T., Čaplovičová, M., Habler, G., Vretenár, V., Susi, T. & Skákalová, V., 15 Nov 2021, In: Carbon. 185, p. 300-313 14 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Chemistry at graphene edges in the electron microscope
Leuthner, G. T., Susi, T., Mangler, C., Meyer, J. C. & Kotakoski, J., 29 Apr 2021, In: 2D Materials. 8, 3, 8 p., 035023.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Interferometric 4D-STEM for Lattice Distortion and Interlayer Spacing Measurements of Bilayer and Trilayer 2D Materials
Zachman, M. J., Madsen, J., Zhang, X., Ajayan, P. M., Susi, T. & Chi, M., 15 Jul 2021, In: Small. 17, 28, 10 p., 2100388.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Mechanism of Electron-Beam Manipulation of Single-Dopant Atoms in Silicon
Markevich, A., Hudak, B. M., Madsen, J., Song, J., Snijders, P. C., Lupini, A. R. & Susi, T., 19 Jul 2021, In: Journal of Physical Chemistry C. 125, 29, p. 16041–16048 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Single Indium Atoms and Few-Atom Indium Clusters Anchored onto Graphene via Silicon Heteroatoms
Elibol, K., Mangler, C., O'Regan, D. D., Mustonen, K., Eder, D., Meyer, J. C., Kotakoski, J., Hobbs, R. G., Susi, T. & Bayer, B. C., 19 Aug 2021, In: ACS Nano. 15, 9, p. 14373–14383 11 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Step-By-Step Atomic Insights into Structural Reordering from 2D to 3D MoS2
Inani, H., Shin, D. H., Madsen, J., Jeong, H. J., Kwon, M. H., McEvoy, N., Susi, T., Mangler, C., Lee, S. W., Mustonen, K. & Kotakoski, J., 24 Mar 2021, In: Advanced Functional Materials. 31, 13, 9 p., 2008395.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
The abTEM code: Transmission electron microscopy from first principles
Madsen, J. & Susi, T., 24 Mar 2021, In: Open Research Europe. 1, 24.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2020
Tailoring Electronic and Magnetic Properties of Graphene by Phosphorus Doping
Langer, R., Błoński, P., Hofer, C., Lazar, P., Mustonen, K., Meyer, J. C., Susi, T. & Otyepka, M., 29 Jul 2020, In: ACS Applied Materials and Interfaces. 12, 30, p. 34074-34085 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2019
Direct imaging of light-element impurities in graphene reveals triple-coordinated oxygen
Hofer, C., Skákalová, V., Görlich, T., Tripathi, M., Mittelberger, A., Mangler, C., Monazam, M. R. A., Susi, T., Kotakoski, J. & Meyer, J. C., 8 Oct 2019, In: Nature Communications. 10, 1, 8 p., 4570.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Efficient first principles simulation of electron scattering factors for transmission electron microscopy
Susi, T., Madsen, J., Ludacka, U., Mortensen, J. J., Pennycook, T. J., Lee, Z., Kotakoski, J., Kaiser, U. & Meyer, J. C., 1 Feb 2019, In: Ultramicroscopy. 197, p. 16-22 7 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Electron-Beam Manipulation of Silicon Impurities in Single-Walled Carbon Nanotubes
Mustonen, K., Markevich, A., Tripathi, M., Inani, H., Ding, E. X., Hussain, A., Mangler, C., Kauppinen, E. I., Kotakoski, J. & Susi, T., 27 Dec 2019, In: Advanced Functional Materials. 29, 52, 7 p., 1901327.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Engineering single-atom dynamics with electron irradiation
Su, C., Tripathi, M., Yan, Q. B., Wang, Z., Zhang, Z., Hofer, C., Wang, H., Basile, L., Su, G., Dong, M., Meyer, J. C., Kotakoski, J., Kong, J., Idrobo, J. C., Susi, T. & Li, J., 17 May 2019, In: Science Advances. 5, 5, 11 p., 2252.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Influence of temperature on the displacement threshold energy in graphene
Chirita Mihaila, A. I., Susi, T. & Kotakoski, J., 10 Sept 2019, In: Scientific Reports. 9, 1, 7 p., 12981.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Microwave Energy Drives “On–Off–On” Spin-Switch Behavior in Nitrogen-Doped Graphene
Zoppellaro, G., Bakandritsos, A., Tuček, J., Błoński, P., Susi, T., Lazar, P., Bad'ura, Z., Steklý, T., Opletalová, A., Otyepka, M. & Zbořil, R., 13 Sept 2019, In: Advanced Materials. 31, 37, 9 p., 1902587.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Silicon Substitution in Nanotubes and Graphene via Intermittent Vacancies
Inani, H., Mustonen, K., Markevich, A., Ding, E-X., Tripathi, M., Hussain, A., Mangler, C., Kauppinen, E. I., Susi, T. & Kotakoski, J., 23 May 2019, In: Journal of Physical Chemistry C. 123, 20, p. 13136-13140 5 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2018
Atomic-Scale Deformations at the Interface of a Mixed-Dimensional van der Waals Heterostructure
Mustonen, K., Hussain, A., Hofer, C., Reza Ahmadpour Monazam, M., Mirzayev, R., Elibol, K., Laiho, P., Mangler, C., Jiang, H., Susi, T., Kauppinen, E. I., Kotakoski, J. & Meyer, J. C., 28 Aug 2018, In: ACS Nano. 12, 8, p. 8512–8519 8 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Atomic-Scale in Situ Observations of Crystallization and Restructuring Processes in Two-Dimensional MoS2 Films
Bayer, B. C., Kaindl, R., Reza Ahmadpour Monazam, M., Susi, T., Kotakoski, J., Gupta, T., Eder, D., Waldhauser, W. & Meyer, J. C., 28 Aug 2018, In: ACS Nano. 12, 8, p. 8758–8769 12 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Electron-Beam Manipulation of Silicon Dopants in Graphene
Tripathi, M., Mittelberger, A., Pike, N., Mangler, C., Meyer, J. C., Verstraete, M., Kotakoski, J. & Susi, T., Aug 2018, In: Nano Letters. 18, 8, p. 5319–5323 5 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Intrinsic core level photoemission of suspended monolayer graphene
Susi, T., Scardamaglia, M., Mustonen, K., Tripathi, M., Mittelberger, A., Al-Hada, M., Amati, M., Sezen, H., Zeller, P., Larsen, A. H., Mangler, C., Meyer, J. C., Gregoratti, L., Bittencourt, C. & Kotakoski, J., 23 Jul 2018, In: Physical Review Materials. 2, 7, 6 p., 074005.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Zigzag sp2 Carbon Chains Passing through an sp3 Framework: A Driving Force toward Room-Temperature Ferromagnetic Graphene
Tuček, J., Holá, K., Zoppellaro, G., Bloński, P., Langer, R., Medved, M., Susi, T., Otyepka, M. & Zbořil, R., 5 Dec 2018, In: ACS Nano. 12, 12, p. 12847–12859 13 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access