Publications per year
Publications per year
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2024
Proteome-scale tagging and functional screening in mammalian cells by ORFtag
Nemcko, F., Staltner, M., Lousier, V., Yelagandula, R., Pagani, M., Fasching, N., Brennecke, J., Elling, U., Stark, A. & Ameres, S., 16 Jan 2024, bioRxiv.Publications: Working paper › Preprint
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2023
Mime-seq 2.0: a method to sequence microRNAs from specific mouse cell types
Mandlbauer, A., Sun, Q., Popitsch, N., Schwickert, T. A., Spanova, M., Wang, J., Ameres, S., Busslinger, M. & Cochella, L., 6 Nov 2023, bioRxiv.Publications: Working paper › Preprint
Open Access -
SLAMseq resolves the kinetics of maternal and zygotic gene expression during early zebrafish embryogenesis
Bhat, P., Cabrera-Quio, L. E., Herzog, V. A., Fasching, N., Pauli, A. & Ameres, S. L., 28 Feb 2023, In: Cell Reports. 42, 2, 112070.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
2022
Hijacking of transcriptional condensates by endogenous retroviruses
Asimi, V., Sampath Kumar, A., Niskanen, H., Riemenschneider, C., Hetzel, S., Naderi, J., Fasching, N., Popitsch, N., Du, M., Kretzmer, H., Smith, Z. D., Weigert, R., Walther, M., Mamde, S., Meierhofer, D., Wittler, L., Buschow, R., Timmermann, B., Cisse, I. I., Ameres, S. L., & 2 others, Aug 2022, In: Nature Genetics. 54, 8, p. 1238-1247 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
NMD is required for timely cell fate transitions by fine-tuning gene expression and regulating translation
Huth, M., Santini, L., Galimberti, E., Ramesmayer, J., Titz-Teixeira, F., Sehlke, R., Oberhuemer, M., Stummer, S., Herzog, V., Garmhausen, M., Romeike, M., Chugunova, A., Leesch, F., Holcik, L., Weipoltshammer, K., Lackner, A., Schoefer, C., von Haeseler, A., Bücker, C., Pauli, A., & 4 others, 3 Mar 2022, In: Genes & Development. 36, 5-6, p. 348-367 20 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access -
Transcriptome-Wide Profiling of RNA Stability
Fasching, N., Petržílek, J., Popitsch, N., Herzog, V. A. & Ameres, S. L., 2022, Post-Transcriptional Gene Regulation. 3 ed. New York, Vol. 2404. p. 311-330 20 p. (Methods in Molecular Biology).Publications: Contribution to book › Chapter
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2021
Systematic refinement of gene annotations by parsing mRNA 3' end sequencing datasets
Bhat, P., Burkard, T. R., Herzog, V. A., Pauli, A. & Ameres, S. L., 2021, mRNA 3' End Processing and Metabolism. Tian, B. (ed.). Cambridge: Academic Press, p. 205-223 19 p. (Methods in Enzymology, Vol. 655).Publications: Contribution to book › Chapter
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2020
Conformation of sister chromatids in the replicated human genome
Mitter, M., Gasser, C., Takacs, Z., Langer, C. C. H., Tang, W., Jessberger, G., Beales, C. T., Neuner, E., Ameres, S. L., Peters, J-M., Goloborodko, A., Micura, R. & Gerlich, D. W., 1 Oct 2020, In: Nature. 586, 7827, p. 139-144 6 p.Publications: Contribution to journal › Article › Peer Reviewed
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Structure-function analysis of microRNA 3 '-end trimming by Nibbler
Xie, W., Sowemimo, I., Hayashi, R., Wang, J., Burkard, T. R., Brennecke, J., Ameres, S. L. & Patel, D. J., 1 Dec 2020, In: Proceedings of the National Academy of Sciences of the United States of America (PNAS). 117, 48, p. 30370-30379 10 p.Publications: Contribution to journal › Article › Peer Reviewed
Open Access