Variational Modeling of Carbon Nanostructures

2019

Efficient first principles simulation of electron scattering factors for transmission electron microscopy

Susi, T., Madsen, J., Ludacka, U., Mortensen, J. J., Pennycook, T. J., Lee, Z., Kotakoski, J., Kaiser, U. & Meyer, J. C., 1 Feb 2019, In: Ultramicroscopy. 197, p. 16-22 7 p.

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Open Access

Electron-Beam Manipulation of Silicon Impurities in Single-Walled Carbon Nanotubes

Mustonen, K., Markevich, A., Tripathi, M., Inani, H., Ding, E. X., Hussain, A., Mangler, C., Kauppinen, E. I., Kotakoski, J. & Susi, T., 27 Dec 2019, In: Advanced Functional Materials. 29, 52, 7 p., 1901327.

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Open Access

Engineering single-atom dynamics with electron irradiation

Su, C., Tripathi, M., Yan, Q. B., Wang, Z., Zhang, Z., Hofer, C., Wang, H., Basile, L., Su, G., Dong, M., Meyer, J. C., Kotakoski, J., Kong, J., Idrobo, J. C., Susi, T. & Li, J., 17 May 2019, In: Science Advances. 5, 5, 11 p., 2252.

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Open Access

Enhanced Tunneling in a Hybrid of Single-Walled Carbon Nanotubes and Graphene

Liao, Y., Mustonen, K., Tulić, S., Skákalová, V., Khan, S. A., Laiho, P., Zhang, Q., Li, C., Monazam, M. R. A., Kotakoski, J., Lipsanen, H. & Kauppinen, E. I., 9 Sept 2019, In: ACS Nano. 13, 10, p. 11522-11529 8 p.

Publications: Contribution to journal › Article › Peer Reviewed

Perforating Freestanding Molybdenum Disulfide Monolayers with Highly Charged Ions

Kozubek, R., Tripathi, M., Ghorbani-Asl, M., Kretschmer, S., Madauß, L., Pollmann, E., O'Brien, M., McEvoy, N., Ludacka, U., Susi, T., Duesberg, G. S., Wilhelm, R. A., Krasheninnikov, A. V., Kotakoski, J. & Schleberger, M., 7 Mar 2019, In: Journal of Physical Chemistry Letters. 10, 5, p. 904-910 13 p.

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Open Access

Quantifying transmission electron microscopy irradiation effects using two-dimensional materials

Susi, T., Meyer, J. C. & Kotakoski, J., Jun 2019, In: Nature Reviews Physics. 1, 6, p. 397-405 9 p.

Publications: Contribution to journal › Review › Peer Reviewed

Open Access

Scanning transmission electron microscopy under controlled low-pressure atmospheres

Leuthner, G. T., Hummel, S., Mangler, C., Pennycook, T. J., Susi, T., Meyer, J. C. & Kotakoski, J., Aug 2019, In: Ultramicroscopy. 203, p. 76-81 6 p.

Publications: Contribution to journal › Article › Peer Reviewed

Open Access

Silicon Substitution in Nanotubes and Graphene via Intermittent Vacancies

Inani, H., Mustonen, K., Markevich, A., Ding, E-X., Tripathi, M., Hussain, A., Mangler, C., Kauppinen, E. I., Susi, T. & Kotakoski, J., 23 May 2019, In: Journal of Physical Chemistry C. 123, 20, p. 13136-13140 5 p.

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Open Access

Substitutional Si impurities in monolayer hexagonal boron nitride

Monazam, M. R. A., Ludacka, U., Komsa, H-P. & Kotakoski, J., 16 Aug 2019, In: Applied Physics Letters. 115, 7, 5 p., 071604.

Publications: Contribution to journal › Article › Peer Reviewed

2018

2D Material Science: Defect Engineering by Particle Irradiation

Schleberger, M. & Kotakoski, J., Oct 2018, In: Materials - Open Access Journal. 11, 10, 29 p., 1885.

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Open Access

Atomic-Scale Deformations at the Interface of a Mixed-Dimensional van der Waals Heterostructure

Mustonen, K., Hussain, A., Hofer, C., Reza Ahmadpour Monazam, M., Mirzayev, R., Elibol, K., Laiho, P., Mangler, C., Jiang, H., Susi, T., Kauppinen, E. I., Kotakoski, J. & Meyer, J. C., 28 Aug 2018, In: ACS Nano. 12, 8, p. 8512–8519 8 p.

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Open Access

Atomic Structure of Intrinsic and Electron-Irradiation-Induced Defects in MoTe2

Elibol, K., Susi, T., Argentero, G., Monazam, M. R. A., Pennycook, T. J., Meyer, J. C. & Kotakoski, J., 27 Feb 2018, In: Chemistry of Materials. 30, 4, p. 1230-1238 9 p.

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Open Access

Chemical Oxidation of Graphite: Evolution of the Structure and Properties

Skákalová, V., Kotrusz, P., Jergel, M., Susi, T., Mittelberger, A., Vretenár, V., Šiffalovič, P., Kotakoski, J., Meyer, J. C. & Hulman, M., 11 Jan 2018, In: Journal of Physical Chemistry C. 122, 1, p. 929-935 7 p.

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Open Access

Electron-Beam Manipulation of Silicon Dopants in Graphene

Tripathi, M., Mittelberger, A., Pike, N., Mangler, C., Meyer, J. C., Verstraete, M., Kotakoski, J. & Susi, T., Aug 2018, In: Nano Letters. 18, 8, p. 5319–5323 5 p.

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Open Access

Implanting Germanium into Graphene

Tripathi, M., Markevich, A., Böttger, R., Facsko, S., Besley, E., Kotakoski, J. & Susi, T., 22 May 2018, In: ACS Nano. 12, 5, p. 4641-4647 7 p.

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Open Access

In situ control of graphene ripples and strain in the electron microscope

Ludacka, U., Monazam, M. R. A., Rentenberger, C., Friedrich, M., Stefanelli, U., Meyer, J. C. & Kotakoski, J., 1 Dec 2018, In: npj 2D Materials and Applications. 2, 1, 6 p., 25.

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Open Access

Intrinsic core level photoemission of suspended monolayer graphene

Susi, T., Scardamaglia, M., Mustonen, K., Tripathi, M., Mittelberger, A., Al-Hada, M., Amati, M., Sezen, H., Zeller, P., Larsen, A. H., Mangler, C., Meyer, J. C., Gregoratti, L., Bittencourt, C. & Kotakoski, J., 23 Jul 2018, In: Physical Review Materials. 2, 7, 6 p., 074005.

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Open Access

2017

A new detection scheme for van der Waals heterostructures, imaging individual fullerenes between graphene sheets, and controlling the vacuum in scanning transmission electron microscopy

Argentero, G., Mustonen, K., Mirzayev, R., Mittelberger, A., Susi, T., Leuthner, G. T., Cao, Y., Monazam, M. R. A., Pennycook, T. J., Mangler, C., Kramberger, C., Geim, A. K., Kotakoski, J. & Meyer, J. C., 1 Jul 2017, In: Microscopy and Microanalysis. 23, S1, p. 460-461 2 p.

Publications: Contribution to journal › Meeting abstract/Conference paper › Peer Reviewed

Buckyball sandwiches

Mirzayev, R., Mustonen, K., Monazam, M. R. A., Mittelberger, A., Pennycook, T. J., Mangler, C., Susi, T., Kotakoski, J. & Meyer, J. C., Jun 2017, In: Science Advances. 3, 6, 6 p., e1700176.

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Open Access

Cleaning graphene: Comparing heat treatments in air and in vacuum

Tripathi, M., Mittelberger, A., Mustonen, K., Mangler, C., Kotakoski, J., Meyer, J. C. & Susi, T., Aug 2017, In: Physica Status Solidi. Rapid Research Letters. 11, 8, 5 p., 1700124.

Publications: Contribution to journal › Short communication › Peer Reviewed

Open Access

Computational insights and the observation of SiC nanograin assembly: towards 2D silicon carbide

Susi, T., Skákalová, V., Mittelberger, A., Kotrusz, P., Hulman, M., Pennycook, T. J., Mangler, C., Kotakoski, J. & Meyer, J. C., 1 Dec 2017, In: Scientific Reports. 7, 1, 9 p., 4399.

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Open Access

Corrigendum to “Creating nanoporous graphene with swift heavy ions” [Carbon 114 (April 2017) 511–518] (S0008622316310843) (10.1016/j.carbon.2016.12.015))

Vazquez, H., Ahlgren, E. H., Ochedowski, O., Leino, A. A., Mirzayev, R., Kozubek, R., Lebius, H., Karlusic, M., Jaksic, M., Krasheninnikov, A. V., Kotakoski, J., Schleberger, M., Nordlund, K. & Djurabekova, F., Aug 2017, In: Carbon. 119, p. 200-200 1 p.

Publications: Contribution to journal › Correction › Peer Reviewed

Open Access

Creating nanoporous graphene with swift heavy ions

Vázquez, H., Åhlgren, E. H., Ochedowski, O., Leino, A. A., Mirzayev, R., Kozubek, R., Lebius, H., Karlušic, M., Jakšic, M., Krasheninnikov, A. V., Kotakoski, J., Schleberger, M., Nordlund, K. & Djurabekova, F., 1 Apr 2017, In: Carbon. 114, p. 511-518 8 p.

Publications: Contribution to journal › Article › Peer Reviewed

Defect engineering of single- and few-layer MoS2 by swift heavy ion irradiation

Madauß, L., Ochedowski, O., Lebius, H., Ban-d'Etat, B., Naylor, C. H., Johnson, A. T. C., Kotakoski, J. & Schleberger, M., Mar 2017, In: 2D Materials. 4, 1, 10 p., 015034.

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Open Access

Engineering and modifying two-dimensional materials by electron beams

Zhao, X., Kotakoski, J., Meyer, J. C., Sutter, E., Sutter, P., Krasheninnikov, A. V., Kaiser, U. & Zhou, W., Sept 2017, In: MRS Bulletin. 42, 9, p. 667-676 10 p.

Publications: Contribution to journal › Article › Peer Reviewed

Grain boundary-mediated nanopores in molybdenum disulfide grown by chemical vapor deposition

Elibol, K., Susi, T., O'Brien, M., Bayer, B. C., Pennycook, T. J., McEvoy, N., Duesberg, G. S., Meyer, J. C. & Kotakoski, J., 28 Jan 2017, In: Nanoscale. 9, 4, p. 1591-1598 8 p.

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Open Access

Introducing Overlapping Grain Boundaries in Chemical Vapor Deposited Hexagonal Boron Nitride Monolayer Films

Bayer, B. C., Caneva, S., Pennycook, T. J., Kotakoski, J., Mangler, C., Hofmann, S. & Meyer, J. C., 23 May 2017, In: ACS Nano. 11, 5, p. 4521-4527 7 p.

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Open Access

Manipulating low-dimensional materials down to the level of single atoms with electron irradiation

Susi, T., Meyer, J. C. & Kotakoski, J., Sept 2017, In: Ultramicroscopy. 180, p. 163-172 10 p.

Publications: Contribution to journal › Article › Peer Reviewed

Open Access

Single-atom spectroscopy of phosphorus dopants implanted into graphene

Susi, T., Hardcastle, T. P., Hofsäss, H., Mittelberger, A., Pennycook, T., Mangler, C., Drummond-Brydson, R., Scott, A. J., Meyer, J. C. & Kotakoski, J., 17 Feb 2017, In: 2D Materials. 4, 2, 7 p., 021013.

Publications: Contribution to journal › Article › Peer Reviewed

Open Access

Structure and Energetics of Embedded Si Patterns in Graphene

Nosraty Alamdary, D., Kotakoski, J. & Susi, T., Nov 2017, In: Physica Status Solidi (B) Basic Research. 254, 11, 6 p., 1700188.

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Open Access

Towards atomically precise manipulation of 2D nanostructures in the electron microscope

Susi, T., Kepaptsoglou, D., Lin, Y-C., Ramasse, Q. M., Meyer, J. C., Suenaga, K. & Kotakoski, J., 8 Sept 2017, In: 2D Materials. 4, 4, 9 p., 042004.

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Open Access

Understanding and Exploiting the Interaction of Electron Beams With Low-dimensional Materials - From Controlled Atomic-level Manipulation to Circumventing Radiation Damage

Susi, T., Mittelberger, A., Kramberger, C., Mangler, C., Hofer, C., Pennycook, T. J., Kotakoski, J. & Meyer, J. C., 1 Jul 2017, In: Microscopy and Microanalysis. 23, S1, p. 196-197 2 p.

Publications: Contribution to journal › Meeting abstract/Conference paper › Peer Reviewed

Unraveling the 3D Atomic Structure of a Suspended Graphene/hBN van der Waals Heterostructure

Argentero, G., Mittelberger, A., Ahmad Pour Monazam, M. R., Cao, Y., Pennycook, T. J., Mangler, C., Kramberger, C., Kotakoski, J., Geim, A. K. & Meyer, J. C., 8 Mar 2017, In: Nano Letters: a journal dedicated to nanoscience and nanotechnology. 17, 3, p. 1409-1416 8 p.

Publications: Contribution to journal › Article › Peer Reviewed

Open Access

2016

Comment on "Temperature dependence of atomic vibrations in mono-layer graphene" [J. Appl. Phys. 118, 074302 (2015)]

Susi, T. & Kotakoski, J., 14 Feb 2016, In: Journal of Applied Physics. 119, 6, 2 p., 066101.

Publications: Contribution to journal › Article › Peer Reviewed

Open Access

Confined linear carbon chains as a route to bulk carbyne

Shi, L., Rohringer, P., Suenaga, K., Niimi, Y., Kotakoski, J., Meyer, J. C., Peterlik, H., Wanko, M., Cahangirov, S., Rubio, A., Lapin, Z. J., Novotny, L., Ayala, P. & Pichler, T., Jun 2016, In: Nature Materials. 15, 6, p. 634-639

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Open Access

High-Performance Hybrid Electronic Devices from Layered PtSe2 Films Grown at Low Temperature

Yim, C., Lee, K., McEvoy, N., O'Brien, M., Riazimehr, S., Berner, N. C., Cullen, C. P., Kotakoski, J., Meyer, J. C., Lemme, M. C. & Duesberg, G. S., Oct 2016, In: ACS Nano. 10, 10, p. 9550-9558 9 p.

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Open Access

Isotope analysis in the transmission electron microscope

Susi, T., Hofer, C., Argentero, G., Leuthner, G. T., Pennycook, T. J., Mangler, C., Meyer, J. C. & Kotakoski, J., 10 Oct 2016, In: Nature Communications. 7, 8 p., 13040.

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Open Access

2015

Toward Two-Dimensional All-Carbon Heterostructures via Ion Beam Patterning of Single-Layer Graphene

Kotakoski, J., Brand, C., Lilach, Y., Cheshnovsky, O., Mangler, C., Arndt, M. & Meyer, J. C., Sept 2015, In: Nano Letters: a journal dedicated to nanoscience and nanotechnology. 15, 9, p. 5944-5949 6 p.

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Open Access

Variational Modeling of Carbon Nanostructures

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