GlobDB: a comprehensive species-dereplicated microbial genome resource

Daan R. Speth; Nick Pullen; Samuel T.N. Aroney; Benjamin L. Coltman; Jay Osvatic; Ben J. Woodcroft; Thomas Rattei; Michael Wagner

doi:10.1093/bioadv/vbaf280

GlobDB: a comprehensive species-dereplicated microbial genome resource

Daan R. Speth
, Nick Pullen
, Samuel T.N. Aroney
, Benjamin L. Coltman
, Jay Osvatic
, Ben J. Woodcroft
, Thomas Rattei
, Michael Wagner

Publications: Contribution to journal › Article › Peer Reviewed

Abstract

Motivation: Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. Results: The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.

Original language	English
Article number	vbaf280
Journal	Bioinformatics advances
Volume	5
Issue number	1
DOIs	https://doi.org/10.1093/bioadv/vbaf280
Publication status	Published - 2025

Austrian Fields of Science 2012

106022 Microbiology
106005 Bioinformatics
106014 Genomics

Access to Document

10.1093/bioadv/vbaf280

Cite this

@article{578589a423e743fb82dcd3a1618df798,

title = "GlobDB: a comprehensive species-dereplicated microbial genome resource",

abstract = "Motivation: Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. Results: The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.",

author = "Speth, \{Daan R.\} and Nick Pullen and Aroney, \{Samuel T.N.\} and Coltman, \{Benjamin L.\} and Jay Osvatic and Woodcroft, \{Ben J.\} and Thomas Rattei and Michael Wagner",

note = "Publisher Copyright: {\textcopyright} 2025 The Author(s). Published by Oxford University Press.",

year = "2025",

doi = "10.1093/bioadv/vbaf280",

language = "English",

volume = "5",

journal = "Bioinformatics advances",

issn = "2635-0041",

publisher = "Oxford University Press",

number = "1",

}

TY - JOUR

T1 - GlobDB

T2 - a comprehensive species-dereplicated microbial genome resource

AU - Speth, Daan R.

AU - Pullen, Nick

AU - Aroney, Samuel T.N.

AU - Coltman, Benjamin L.

AU - Osvatic, Jay

AU - Woodcroft, Ben J.

AU - Rattei, Thomas

AU - Wagner, Michael

PY - 2025

Y1 - 2025

N2 - Motivation: Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. Results: The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.

AB - Motivation: Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. Results: The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB more than doubles the number of microbial species represented by genomes relative to the field standard genome taxonomy database.

UR - https://www.scopus.com/pages/publications/105022512131

U2 - 10.1093/bioadv/vbaf280

DO - 10.1093/bioadv/vbaf280

M3 - Article

AN - SCOPUS:105022512131

SN - 2635-0041

VL - 5

JO - Bioinformatics advances

JF - Bioinformatics advances

IS - 1

M1 - vbaf280

ER -

GlobDB: a comprehensive species-dereplicated microbial genome resource

Abstract

Austrian Fields of Science 2012

Access to Document

Other files and links

Fingerprint

Cite this