Abstract
We propose a linear time graph transformation that enables the Weisfeiler-Leman (WL)
algorithm and message passing graph neural networks (MPNNs) to be maximally expressive
on outerplanar graphs. Our approach is motivated by the fact that most pharmaceutical
molecules correspond to outerplanar graphs. Existing research predominantly enhances the
expressivity of graph neural networks without specific graph families in mind. This often
leads to methods that are impractical due to their computational complexity. In contrast,
the restriction to outerplanar graphs enables us to encode the Hamiltonian cycle of each
biconnected component in linear time. As the main contribution of the paper we prove that
our method achieves maximum expressivity on outerplanar graphs. Experiments confirm
that our graph transformation improves the predictive performance of MPNNs on molecular
benchmark datasets at negligible computational overhead.
algorithm and message passing graph neural networks (MPNNs) to be maximally expressive
on outerplanar graphs. Our approach is motivated by the fact that most pharmaceutical
molecules correspond to outerplanar graphs. Existing research predominantly enhances the
expressivity of graph neural networks without specific graph families in mind. This often
leads to methods that are impractical due to their computational complexity. In contrast,
the restriction to outerplanar graphs enables us to encode the Hamiltonian cycle of each
biconnected component in linear time. As the main contribution of the paper we prove that
our method achieves maximum expressivity on outerplanar graphs. Experiments confirm
that our graph transformation improves the predictive performance of MPNNs on molecular
benchmark datasets at negligible computational overhead.
| Original language | English |
|---|---|
| Number of pages | 20 |
| Journal | Transactions on Machine Learning Research (TMLR) |
| Publication status | Published - 3 Jan 2025 |
Austrian Fields of Science 2012
- 102019 Machine learning
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Dive into the research topics of 'Maximally Expressive GNNs for Outerplanar Graphs'. Together they form a unique fingerprint.Projects
- 2 Active
-
StruDL: Structured Data Learning with General Similarities
Kriege, N. M. (Project Lead), Gärtner, T. (Co-Lead) & Flamm, C. (Co-Lead)
1/05/23 → 30/04/27
Project: Research funding
-
Algorithmic Data Science for Computational Drug Discovery
Kriege, N. M. (Project Lead) & Gansterer, W. (Co-Lead)
1/05/20 → 30/11/28
Project: Research funding
Research output
- 1 Paper
-
Maximally Expressive GNNs for Outerplanar Graphs
Bause, F., Jogl, F., Indri, P., Drucks, T., Penz, D., Kriege, N. M., Gärtner, T., Welke, P. & Thiessen, M., 2023, (Unpublished).Publications: Contribution to conference › Paper › Peer Reviewed
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