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Polygenic Risk Score Simulation: A case study of sudden cardiovascular diseases derived from literature insights.

  • Jana Schwarzerova
  • , Lenka Piherova
  • , Petra Polakovicova
  • , Simona Guziurova
  • , Eva Kutilova
  • , Martina Adamova
  • , Alice Krebsova
  • , Valentine Provazník
  • , Wolfram Weckwerth
  • , Radka Sitkova

Publications: Contribution to bookContribution to proceedingsPeer Reviewed

Abstract

Sudden cardiovascular diseases, including sudden cardiac arrest (SCA) and myocardial infarction (MI), remain among the leading causes of mortality worldwide. This study employs synthetic data simulations to develop polygenic risk scores (PRS) for improved identification of individuals at elevated risk. Leveraging genetic and phenotypic information from established literature, we modeled associations between multiple single nucleotide polymorphisms (SNPs) and the risk of sudden cardiovascular diseases. Our case study demonstrated that individuals with higher PRS values have a significantly increased risk of SCA and MI, with SNPs such as LTA (252A>G) identified as notable contributors. Additionally, combining PRS with traditional cardiovascular risk factors, such as smoking and diabetes, improved predictive accuracy, underscoring the value of integrating genetic data with clinical variables. These findings highlight the cumulative effect of genetic predispositions in determining cardiovascular risk and suggest potential applications of PRS models in personalized medicine to enhance preventive strategiesWhile promising, the study recognizes limitations related to the use of synthetic data and the need for validation in diverse, real-world populations. Future research should focus on refining these models and exploring additional genetic markers to further improve prediction capabilities.
Original languageEnglish
Title of host publication2024 IEEE International Conference on Bioinformatics and Biomedicine
EditorsMario Cannataro, Huiru Zheng, Lin Gao, Jianlin Cheng, Joao Luis de Miranda, Ester Zumpano, Xiaohua Hu, Young-Rae Cho, Taesung Park
Pages5081-5088
Number of pages8
ISBN (Electronic)9798350386226
DOIs
Publication statusPublished - 3 Dec 2024
EventInternational Conference on Bioinformatics and Biomedicine (BIBM) - Lisbon, Portugal
Duration: 3 Dec 20246 Dec 2024
http://ieeebibm.org/BIBM2024

Publication series

SeriesIEEE International Conference on Bioinformatics and Biomedicine
ISSN2156-1125

Conference

ConferenceInternational Conference on Bioinformatics and Biomedicine (BIBM)
Country/TerritoryPortugal
CityLisbon
Period3/12/246/12/24
Internet address

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

  1. SDG 3 - Good Health and Well-being
    SDG 3 Good Health and Well-being

Austrian Fields of Science 2012

  • 305905 Medical informatics

Keywords

  • Precision medicine
  • Synthetic data
  • Risk management
  • Diabetes
  • Data models
  • Genetics
  • Myocardium
  • Predictive models
  • Mortality
  • Refining
  • Sudden Cardiovascular Disease
  • Personalized Medicine
  • Genetic Risk Prediction
  • Genetic Variants
  • Probabilistic Statistics

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