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QSDB—a graphical Quorum Sensing Database

  • Karsten Klein (Corresponding author)
  • , Dimitar Garkov
  • , Sina Rütschlin
  • , Thomas Böttcher
  • , Falk Schreiber

Publications: Contribution to journalArticlePeer Reviewed

Abstract

The human microbiome is largely shaped by the chemical interactions of its microbial members, which includes cross-talk via shared signals or quenching of the signalling of other species. Quorum sensing is a process that allows microbes to coordinate their behaviour in dependence of their population density and to adjust gene expression accordingly. We present the Quorum Sensing Database (QSDB), a comprehensive database of all published sensing and quenching relations between organisms and signalling molecules of the human microbiome, as well as an interactive web interface that allows browsing the database, provides graphical depictions of sensing mechanisms as Systems Biology Graphical Notation diagrams and links to other databases.

Original languageEnglish
Article numberbaab058
Number of pages5
JournalDatabase: The Journal of Biological Databases and Curation
Volume2021
DOIs
Publication statusPublished - 26 Nov 2021

Austrian Fields of Science 2012

  • 104004 Chemical biology
  • 106005 Bioinformatics

Keywords

  • SYSTEMS

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