The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Dominik Kopczynski; Christer S. Ejsing; Jeffrey G. McDonald; Takeshi Bamba; Erin S. Baker; Justine Bertrand-Michel; Britta Brügger; Cristina Coman; Shane R. Ellis; Timothy J. Garrett; William J. Griffiths; Xue Li Guan; Xianlin Han; Marcus Höring; Michal Holčapek; Nils Hoffmann; Kevin Huynh; Rainer Lehmann; Jace W. Jones; Rima Kaddurah-Daouk; Harald C. Köfeler; Peter J. Meikle; Thomas O. Metz; Valerie B. O’Donnell; Daisuke Saigusa; Dominik Schwudke; Andrej Shevchenko; Federico Torta; Juan Antonio Vizcaíno; Ruth Welti; Markus R. Wenk; Denise Wolrab; Yu Xia; Kim Ekroos; Robert Ahrends; Gerhard Liebisch

doi:10.1016/j.jlr.2024.100621

The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Dominik Kopczynski
, Christer S. Ejsing
, Jeffrey G. McDonald
, Takeshi Bamba
, Erin S. Baker
, Justine Bertrand-Michel
, Britta Brügger
, Cristina Coman
, Shane R. Ellis
, Timothy J. Garrett
, William J. Griffiths
, Xue Li Guan
, Xianlin Han
, Marcus Höring
, Michal Holčapek
, Nils Hoffmann
, Kevin Huynh
, Rainer Lehmann
, Jace W. Jones
, Rima Kaddurah-Daouk

Harald C. Köfeler, Peter J. Meikle, Thomas O. Metz, Valerie B. O’Donnell, Daisuke Saigusa, Dominik Schwudke, Andrej Shevchenko, Federico Torta, Juan Antonio Vizcaíno, Ruth Welti, Markus R. Wenk, Denise Wolrab, Yu Xia, Kim Ekroos (Corresponding author), Robert Ahrends (Corresponding author), Gerhard Liebisch (Corresponding author)

Department of Analytical Chemistry

Publications: Contribution to journal › Article › Peer Reviewed

Abstract

The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

Original language	English
Article number	100621
Journal	Journal of Lipid Research
Volume	65
Issue number	9
DOIs	https://doi.org/10.1016/j.jlr.2024.100621
Publication status	Published - Sept 2024

Austrian Fields of Science 2012

301302 Lipidomics research
106005 Bioinformatics
106052 Cell biology

Keywords

checklist
FAIR
lipid metabolism
lipidomics
mass spectrometry
metabolomics
quality control
reference standards

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10.1016/j.jlr.2024.100621

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Kopczynski, D., Ejsing, C. S., McDonald, J. G., Bamba, T., Baker, E. S., Bertrand-Michel, J., Brügger, B., Coman, C., Ellis, S. R., Garrett, T. J., Griffiths, W. J., Guan, X. L., Han, X., Höring, M., Holčapek, M., Hoffmann, N., Huynh, K., Lehmann, R., Jones, J. W., ... Liebisch, G. (2024). The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data. Journal of Lipid Research, 65(9), Article 100621. https://doi.org/10.1016/j.jlr.2024.100621

@article{a6c09a8dcf3847cb97e51986cf3195c2,

title = "The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data",

abstract = "The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.",

keywords = "checklist, FAIR, lipid metabolism, lipidomics, mass spectrometry, metabolomics, quality control, reference standards",

author = "Dominik Kopczynski and Ejsing, \{Christer S.\} and McDonald, \{Jeffrey G.\} and Takeshi Bamba and Baker, \{Erin S.\} and Justine Bertrand-Michel and Britta Br{\"u}gger and Cristina Coman and Ellis, \{Shane R.\} and Garrett, \{Timothy J.\} and Griffiths, \{William J.\} and Guan, \{Xue Li\} and Xianlin Han and Marcus H{\"o}ring and Michal Hol{\v c}apek and Nils Hoffmann and Kevin Huynh and Rainer Lehmann and Jones, \{Jace W.\} and Rima Kaddurah-Daouk and K{\"o}feler, \{Harald C.\} and Meikle, \{Peter J.\} and Metz, \{Thomas O.\} and O{\textquoteright}Donnell, \{Valerie B.\} and Daisuke Saigusa and Dominik Schwudke and Andrej Shevchenko and Federico Torta and Vizca{\'i}no, \{Juan Antonio\} and Ruth Welti and Wenk, \{Markus R.\} and Denise Wolrab and Yu Xia and Kim Ekroos and Robert Ahrends and Gerhard Liebisch",

note = "Publisher Copyright: {\textcopyright} 2024 THE AUTHORS. Accession Number WOS:001367437400001 PubMed ID 39151590",

year = "2024",

month = sep,

doi = "10.1016/j.jlr.2024.100621",

language = "English",

volume = "65",

journal = "Journal of Lipid Research",

issn = "0022-2275",

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Kopczynski, D, Ejsing, CS, McDonald, JG, Bamba, T, Baker, ES, Bertrand-Michel, J, Brügger, B, Coman, C, Ellis, SR, Garrett, TJ, Griffiths, WJ, Guan, XL, Han, X, Höring, M, Holčapek, M, Hoffmann, N, Huynh, K, Lehmann, R, Jones, JW, Kaddurah-Daouk, R, Köfeler, HC, Meikle, PJ, Metz, TO, O’Donnell, VB, Saigusa, D, Schwudke, D, Shevchenko, A, Torta, F, Vizcaíno, JA, Welti, R, Wenk, MR, Wolrab, D, Xia, Y, Ekroos, K, Ahrends, R & Liebisch, G 2024, 'The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data', Journal of Lipid Research, vol. 65, no. 9, 100621. https://doi.org/10.1016/j.jlr.2024.100621

TY - JOUR

T1 - The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

AU - Kopczynski, Dominik

AU - Ejsing, Christer S.

AU - McDonald, Jeffrey G.

AU - Bamba, Takeshi

AU - Baker, Erin S.

AU - Bertrand-Michel, Justine

AU - Brügger, Britta

AU - Coman, Cristina

AU - Ellis, Shane R.

AU - Garrett, Timothy J.

AU - Griffiths, William J.

AU - Guan, Xue Li

AU - Han, Xianlin

AU - Höring, Marcus

AU - Holčapek, Michal

AU - Hoffmann, Nils

AU - Huynh, Kevin

AU - Lehmann, Rainer

AU - Jones, Jace W.

AU - Kaddurah-Daouk, Rima

AU - Köfeler, Harald C.

AU - Meikle, Peter J.

AU - Metz, Thomas O.

AU - O’Donnell, Valerie B.

AU - Saigusa, Daisuke

AU - Schwudke, Dominik

AU - Shevchenko, Andrej

AU - Torta, Federico

AU - Vizcaíno, Juan Antonio

AU - Welti, Ruth

AU - Wenk, Markus R.

AU - Wolrab, Denise

AU - Xia, Yu

AU - Ekroos, Kim

AU - Ahrends, Robert

AU - Liebisch, Gerhard

PY - 2024/9

Y1 - 2024/9

N2 - The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

AB - The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

KW - checklist

KW - FAIR

KW - lipid metabolism

KW - lipidomics

KW - mass spectrometry

KW - metabolomics

KW - quality control

KW - reference standards

UR - https://www.scopus.com/pages/publications/85205403670

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DO - 10.1016/j.jlr.2024.100621

M3 - Article

C2 - 39151590

AN - SCOPUS:85205403670

SN - 0022-2275

VL - 65

JO - Journal of Lipid Research

JF - Journal of Lipid Research

IS - 9

M1 - 100621

ER -

The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Abstract

Austrian Fields of Science 2012

Keywords

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